View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_18 (Length: 488)
Name: NF18475_low_18
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 42325082 - 42325322
Alignment:
| Q |
18 |
catcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatgatagtt |
117 |
Q |
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| T |
42325082 |
catcagggtctgtcatcacctacaccaaccaaatatgtatatattagctcagtcatttaggttttgtcaataccattccaataaagcacaaatgatagtt |
42325181 |
T |
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| Q |
118 |
gttagtttgttagagagagggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtgaaatatg |
217 |
Q |
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| T |
42325182 |
gttagtttgttagagagatggatgtttgatgttgtgagagattaaacaatatgaaactaattaaacaaatctctgactatatctaacaaggtgaaatatg |
42325281 |
T |
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| Q |
218 |
tttagcgaag---attgaactctgaaccctgcatataaata |
255 |
Q |
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| T |
42325282 |
tttagcgaagaatattgaactctgaaccctgcatataaata |
42325322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 277 - 471
Target Start/End: Original strand, 42325363 - 42325557
Alignment:
| Q |
277 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
376 |
Q |
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| T |
42325363 |
ggacagacacatagcgtgtttgtgtgagtatgtctgataatagaaaacaacaaaaaatatatgtataccagtgtatagaaggacctcatgtcaccaccat |
42325462 |
T |
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| Q |
377 |
caatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacagtcattttcatg |
471 |
Q |
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| T |
42325463 |
caatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacagtcattttcatg |
42325557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 470
Target Start/End: Original strand, 36278866 - 36278975
Alignment:
| Q |
361 |
ctcatgtcaccaccatcaatctcaactttgggtttggtgttgatagtggaagggaaaaactcatggccattgaagacttgcttcttgttgtaactcacag |
460 |
Q |
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||||| |||||||||| ||||| |||||| ||||| ||| | | | |||||| ||||||||||| |||||| | |||||||| |||||||| | |||| |
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| T |
36278866 |
ctcatatcaccaccatgaatctgaactttaggtttagtggtaactgaggaaggaaaaaactcatgaccattgtaaacttgcttagtgttgtaagtgacag |
36278965 |
T |
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| Q |
461 |
tcattttcat |
470 |
Q |
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| T |
36278966 |
acattttcat |
36278975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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