View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_19 (Length: 466)
Name: NF18475_low_19
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 27 - 448
Target Start/End: Original strand, 48893614 - 48894028
Alignment:
| Q |
27 |
tctcaactactacacagtacactactgataaagataaagattcacaaacaaacaaacacatccaacatcctaacacaaacctgtcccaccaaattacagt |
126 |
Q |
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| T |
48893614 |
tctcaactactacacagtacactactgataaagat------tcacaaacaaacaaacacatccaacatcctaacacaaacctgtcccaccaaattacagt |
48893707 |
T |
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| Q |
127 |
caaactactatactaacttagaaaatgggacttaggtcaaactcaatccattttgcatcnnnnnnnccttcactttttaactctacaatcactcactatc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
48893708 |
caaactactatactaacttagaaaatgggacttaggtcaaacacaatccattttgcatctttttttccttcactttttaactctacaatcact----atc |
48893803 |
T |
|
| Q |
227 |
attacattattgaacagctgctggtagtattgtcatcactgaacatgtgcgc---agagtgatcctccgttggataacaagcatttgcataggagtaatt |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48893804 |
attacattattgaacagctgctggtagtattgtcatcactgaacatgtgtgctgcagagttatcctccgttggataacaagcatttgcataggagtaatt |
48893903 |
T |
|
| Q |
324 |
tgcaggaatgtagttattataattgtaatgatagccagtattaggaggaacaaaaggtgacctgtgatacatcatctgaggctgttgctgcatagcatgc |
423 |
Q |
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| T |
48893904 |
tgcaggaatgtagttattataattgtaatgatagccagtattaggaggaacaaaaggtgacctgtgatacatcatctgaggctgttgctgcatagcatgc |
48894003 |
T |
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| Q |
424 |
cttgcctgcatgttcatcaatgaag |
448 |
Q |
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| T |
48894004 |
cttgcctgcatgttcatcaatgaag |
48894028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 314 - 447
Target Start/End: Original strand, 24742764 - 24742902
Alignment:
| Q |
314 |
aggagtaatttgcaggaatgtagttattataattgtaatgata---gccagtattaggaggaacaaaa--ggtgacctgtgatacatcatctgaggctgt |
408 |
Q |
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| T |
24742764 |
aggagtaatttgcatgaatgtagttattataattgtaataataatagccagtattaggaggaacaaaaaaggtgatgtgtaatacatcatctgaggctgt |
24742863 |
T |
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| Q |
409 |
tgctgcatagcatgccttgcctgcatgttcatcaatgaa |
447 |
Q |
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| T |
24742864 |
tgctgcatagcatgccttgccagcatgttcatcaatgaa |
24742902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 24742663 - 24742716
Alignment:
| Q |
66 |
attcacaaacaaacaaacacatccaacatcctaacacaaacctgtcccaccaaa |
119 |
Q |
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| T |
24742663 |
attcacaaacaaacaaacacatctaacatcctaacacaaacctgtcccaccaaa |
24742716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 10654786 - 10654745
Alignment:
| Q |
407 |
gttgctgcatagcatgccttgcctgcatgttcatcaatgaag |
448 |
Q |
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| T |
10654786 |
gttgctgcatagcatgccttgccagcatgttcatcaatgaag |
10654745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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