View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18475_low_2 (Length: 778)

Name: NF18475_low_2
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18475_low_2
NF18475_low_2
[»] chr6 (14 HSPs)
chr6 (18-771)||(370567-371330)
chr6 (304-526)||(1459578-1459800)
chr6 (308-526)||(1470960-1471178)
chr6 (653-768)||(1453622-1453737)
chr6 (653-768)||(1465314-1465429)
chr6 (308-430)||(7564884-7565006)
chr6 (371-428)||(1442234-1442291)
chr6 (522-556)||(176354-176388)
chr6 (414-495)||(1453908-1453989)
chr6 (414-495)||(1465600-1465681)
chr6 (728-769)||(7564538-7564579)
chr6 (734-769)||(176599-176634)
chr6 (730-769)||(1459316-1459355)
chr6 (522-556)||(1442105-1442139)
[»] chr7 (3 HSPs)
chr7 (308-438)||(3926855-3926985)
chr7 (739-770)||(3927335-3927366)
chr7 (522-555)||(3927079-3927112)
[»] chr4 (4 HSPs)
chr4 (308-441)||(55419578-55419711)
chr4 (687-768)||(55419967-55420048)
chr4 (522-554)||(55419802-55419834)
chr4 (523-565)||(22672115-22672157)
[»] chr3 (5 HSPs)
chr3 (523-565)||(2442060-2442102)
chr3 (526-565)||(989420-989459)
chr3 (523-561)||(4142126-4142164)
chr3 (523-565)||(4157932-4157974)
chr3 (524-565)||(1931142-1931183)
[»] chr2 (1 HSPs)
chr2 (523-556)||(6538855-6538888)
[»] chr1 (2 HSPs)
chr1 (368-429)||(25478730-25478791)
chr1 (368-429)||(25869303-25869364)
[»] chr5 (2 HSPs)
chr5 (523-562)||(23766853-23766892)
chr5 (523-562)||(23816701-23816740)


Alignment Details
Target: chr6 (Bit Score: 689; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 18 - 771
Target Start/End: Complemental strand, 371330 - 370567
Alignment:
Q  18 ggtgtgtcaatgacaaccatggtaatcttgtattttggaacatttttacttggaagttcaagatattgcaacctttggaaaatctaccttatagttcatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  371330 ggtgtgtcaatgacaaccatggtaatcttgtattttggaacatttttactaggaagttcaagatattgccacctttggaaaatctaccttatagttcatt 371231  T
Q  118 tgatgttgtatacagtatcgggtatgattatttcaccgatagttataaggtagttgccatttcgttcaaacaaatcgataattcttgcgaaactgaagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  371230 tgatgttgtatacagtatcgggtatgattatttcaccgatagttataaggtagttgccatttcgttcaaacaaatcgataattcttgcgaaactgaagtt 371131  T
Q  218 agggttcttactttaggtaccaactcttggagtacgattccatgcttaccttctcaactactcatgggtgaactcgaagtttctctaggaaaatttgtaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  371130 agggttcttactttaggtaccaactcttggagtacgattccatgcttaccttctcaactactcatgggtgaactcgaagtttctccaggaaaatttgtaa 371031  T
Q  318 gtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaagagatttcgca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  371030 gtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggtcattctttctcttgatttagaaaaagagtattatcaagagatttcgca 370931  T
Q  418 gcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaacttttacgggcatt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||    
T  370930 gcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgcttatgcatccttgctcagactaaaacttttatgggcgtt 370831  T
Q  518 tgggt----------tatggaaataaagattcttggactaaattgttcaatatttctttcgcgacggaatttggtcatgctgattccatcaatcaatttt 607  Q
    |||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370830 tgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatttctttcgcgacggaatttggtcatgctgattccatcaatcaatttt 370731  T
Q  608 atatttttgaagaggatgaccaattgattttggacttctttgatcaggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatg 707  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370730 atatttttgaagaggatgaccaattgattttgaacttctttgatcaggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatg 370631  T
Q  708 cctcctttctacttcattcacctctaatgtctacgttgagagtctcatatcaccttgacctatg 771  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  370630 cctcctttcaacttcattcatctctaatgtctacgttgagagtctcatatcaccttgacctatg 370567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 304 - 526
Target Start/End: Complemental strand, 1459800 - 1459578
Alignment:
Q  304 aggaaaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattat 403  Q
    |||||||||||||||||| |||||||||||||||||||| |||  | ||||  ||  |||| ||| |||||||||||||||||||| ||| |||| ||||    
T  1459800 aggaaaatttgtaagtggcaccattaattgggtcatactggatcgagagaatgactcttcacgggtcattctttctcttgatttaggaaacgagtcttat 1459701  T
Q  404 caagagatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaa 503  Q
    |||||||||| ||||||| |||||||| ||||||||||||||| | | ||   ||||| ||||| |||||||| || |||| |||||||||| || |||     
T  1459700 caagagattttgcagcctaattatggtttagatgaacctctgcataactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaat 1459601  T
Q  504 cttttacgggcatttgggttatg 526  Q
    |||||  ||  ||||||||||||    
T  1459600 cttttttggatatttgggttatg 1459578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 308 - 526
Target Start/End: Complemental strand, 1471178 - 1470960
Alignment:
Q  308 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 407  Q
    ||||||||| |||| ||||||||||||||| |||||||| || ||||  ||  |||| ||| ||||||||||||| |||||| ||| |||| ||||||||    
T  1471178 aaatttgtatgtggtaccattaattgggtcgtactagatcaagagaatgactcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaag 1471079  T
Q  408 agatttcgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctcagactaaaacttt 507  Q
    ||||||  ||||||||||||| | ||||||||||||||| | | ||   ||||| |||||||||||||| || ||||||||||||||| || ||| ||||    
T  1471078 agattttacagcctgattatgatttagatgaacctctgcgtaactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttt 1470979  T
Q  508 tacgggcatttgggttatg 526  Q
    |  ||  ||||||||||||    
T  1470978 tttggatatttgggttatg 1470960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 653 - 768
Target Start/End: Complemental strand, 1453737 - 1453622
Alignment:
Q  653 aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtct 752  Q
    |||||||||||||||||||||||||||  ||   ||||| |||||| |||||| |||||| |||||     || ||||||||||||||||||||||||||    
T  1453737 aggtatatgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct 1453638  T
Q  753 catatcaccttgacct 768  Q
    || |||||||| ||||    
T  1453637 cacatcaccttaacct 1453622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 653 - 768
Target Start/End: Complemental strand, 1465429 - 1465314
Alignment:
Q  653 aggtatatgtttacaattacaagaatcacactacaaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtct 752  Q
    |||||||||||||||||||||||||||  ||   ||||| |||||| |||||| |||||| |||||     || ||||||||||||||||||||||||||    
T  1465429 aggtatatgtttacaattacaagaatcgtaccctaaagattcctaagattcaaggcctcccttctaacaggtttacctctaatgtctacgttgagagtct 1465330  T
Q  753 catatcaccttgacct 768  Q
    || |||||||| ||||    
T  1465329 cacatcaccttaacct 1465314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 308 - 430
Target Start/End: Complemental strand, 7565006 - 7564884
Alignment:
Q  308 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 407  Q
    ||||||||||||||  ||||| |||||||||||  |||| || | ||  ||  |||||||| ||||||||| ||||||||||  || |||| ||||||||    
T  7565006 aaatttgtaagtggcgccattcattgggtcataaaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgagtcttatcaag 7564907  T
Q  408 agatttcgcagcctgattatggt 430  Q
    |||||| |||||| |||||||||    
T  7564906 agattttgcagccagattatggt 7564884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 1442291 - 1442234
Alignment:
Q  371 attctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatg 428  Q
    ||||| |||||||||||||||||||||| |||||||||||||| |  |||||||||||    
T  1442291 attctctctcttgatttagaaaaagagtcttatcaagagattttgttgcctgattatg 1442234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 556
Target Start/End: Original strand, 176354 - 176388
Alignment:
Q  522 ttatggaaataaagattcttggactaaattgttca 556  Q
    |||||||||||||||||||||||||||||||||||    
T  176354 ttatggaaataaagattcttggactaaattgttca 176388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 495
Target Start/End: Complemental strand, 1453989 - 1453908
Alignment:
Q  414 cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca 495  Q
    ||||||| |||| |||||||||||| ||||||| ||| ||   |||||  || ||||||||||||| |||||||||||||||    
T  1453989 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca 1453908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 495
Target Start/End: Complemental strand, 1465681 - 1465600
Alignment:
Q  414 cgcagcctgattatggtctagatgaacctctgcttgaattccacttggaggtttctagggattgctaatgcatccttgctca 495  Q
    ||||||| |||| |||||||||||| ||||||| ||| ||   |||||  || ||||||||||||| |||||||||||||||    
T  1465681 cgcagcccgattttggtctagatgatcctctgcatgacttgagcttgggagtatctagggattgcttatgcatccttgctca 1465600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 728 - 769
Target Start/End: Complemental strand, 7564579 - 7564538
Alignment:
Q  728 cctctaatgtctacgttgagagtctcatatcaccttgaccta 769  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  7564579 cctctaatgtctatgttgagagtctcgtatcaccttgaccta 7564538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 769
Target Start/End: Original strand, 176599 - 176634
Alignment:
Q  734 atgtctacgttgagagtctcatatcaccttgaccta 769  Q
    ||||||| ||||||||||||||||||||||||||||    
T  176599 atgtctatgttgagagtctcatatcaccttgaccta 176634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 730 - 769
Target Start/End: Complemental strand, 1459355 - 1459316
Alignment:
Q  730 tctaatgtctacgttgagagtctcatatcaccttgaccta 769  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  1459355 tctaatgtctacgcagagagtctcatatcaccttgaccta 1459316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 522 - 556
Target Start/End: Complemental strand, 1442139 - 1442105
Alignment:
Q  522 ttatggaaataaagattcttggactaaattgttca 556  Q
    |||||||| ||||||||||||||||||||||||||    
T  1442139 ttatggaattaaagattcttggactaaattgttca 1442105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 308 - 438
Target Start/End: Original strand, 3926855 - 3926985
Alignment:
Q  308 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 407  Q
    |||||||||||||| || |||||||||| ||||  | || |||||||| |  ||||||||| |||||||||||||||||||| ||| ||||  |||||||    
T  3926855 aaatttgtaagtggcacaattaattgggccatagaaaatcaaaagaactatgattcatgggtcattctttctcttgatttaggaaacgagtcctatcaag 3926954  T
Q  408 agatttcgcagcctgattatggtctagatga 438  Q
    ||||||| | ||| |||| |||||| |||||    
T  3926955 agatttcacggcccgattttggtcttgatga 3926985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 770
Target Start/End: Original strand, 3927335 - 3927366
Alignment:
Q  739 tacgttgagagtctcatatcaccttgacctat 770  Q
    ||||||||||||||||||||||||||||||||    
T  3927335 tacgttgagagtctcatatcaccttgacctat 3927366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 522 - 555
Target Start/End: Original strand, 3927079 - 3927112
Alignment:
Q  522 ttatggaaataaagattcttggactaaattgttc 555  Q
    ||||||||||||| ||||||||||||||||||||    
T  3927079 ttatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 308 - 441
Target Start/End: Original strand, 55419578 - 55419711
Alignment:
Q  308 aaatttgtaagtggaaccattaattgggtcatactagataaaaagaacaacaattcatgggccattctttctcttgatttagaaaaagagtattatcaag 407  Q
    |||||||||||||| ||||||||||||| ||||  |||| || ||||  || ||  ||||| |||||||||||| ||||||| ||| |||| ||||||||    
T  55419578 aaatttgtaagtggcaccattaattgggccatagaagatcaagagaaatactatctatgggtcattctttctctggatttaggaaatgagtcttatcaag 55419677  T
Q  408 agatttcgcagcctgattatggtctagatgaacc 441  Q
     |||| |||| || || |||||||||||||||||    
T  55419678 tgattccgcatcccgagtatggtctagatgaacc 55419711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 768
Target Start/End: Original strand, 55419967 - 55420048
Alignment:
Q  687 aaagactcctaacattcaatgcctcctttctacttcattcacctctaatgtctacgttgagagtctcatatcaccttgacct 768  Q
    ||||| |||| |||||||| |||||| ||| | ||| |||| ||||| ||||||| |||| ||||| |||||||||||||||    
T  55419967 aaagattcctgacattcaaggcctcccttcaaattcgttcaactctattgtctactttgaaagtctgatatcaccttgacct 55420048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 522 - 554
Target Start/End: Original strand, 55419802 - 55419834
Alignment:
Q  522 ttatggaaataaagattcttggactaaattgtt 554  Q
    |||||||||||||||||||||||||||||||||    
T  55419802 ttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 565
Target Start/End: Complemental strand, 22672157 - 22672115
Alignment:
Q  523 tatggaaataaagattcttggactaaattgttcaatatttctt 565  Q
    ||||||||||| || ||||||||||||||||||| ||||||||    
T  22672157 tatggaaataaggaatcttggactaaattgttcactatttctt 22672115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 2442060 - 2442102
Alignment:
Q  523 tatggaaataaagattcttggactaaattgttcaatatttctt 565  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  2442060 tatggaaataaagattcttggactaaattgttcactctttctt 2442102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 565
Target Start/End: Original strand, 989420 - 989459
Alignment:
Q  526 ggaaataaagattcttggactaaattgttcaatatttctt 565  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  989420 ggaaataaagagtcttggactaaattgttcactatttctt 989459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 561
Target Start/End: Complemental strand, 4142164 - 4142126
Alignment:
Q  523 tatggaaataaagattcttggactaaattgttcaatatt 561  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  4142164 tatggaaataaagagtcttggactaaattgttcactatt 4142126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 565
Target Start/End: Complemental strand, 4157974 - 4157932
Alignment:
Q  523 tatggaaataaagattcttggactaaattgttcaatatttctt 565  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||    
T  4157974 tatggaaataaagagtcttggactaaattgttcactatctctt 4157932  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 524 - 565
Target Start/End: Complemental strand, 1931183 - 1931142
Alignment:
Q  524 atggaaataaagattcttggactaaattgttcaatatttctt 565  Q
    ||||||||||||| || |||||||||||||||| ||||||||    
T  1931183 atggaaataaagactcctggactaaattgttcactatttctt 1931142  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 556
Target Start/End: Original strand, 6538855 - 6538888
Alignment:
Q  523 tatggaaataaagattcttggactaaattgttca 556  Q
    ||||||||||||||||||||||||||||||||||    
T  6538855 tatggaaataaagattcttggactaaattgttca 6538888  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 25478730 - 25478791
Alignment:
Q  368 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 429  Q
    |||||| |||||||| |||| |  ||||||| ||||||||||||||| ||||||||||||||    
T  25478730 gccattgtttctcttcatttggggaaagagtcttatcaagagatttcacagcctgattatgg 25478791  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 429
Target Start/End: Complemental strand, 25869364 - 25869303
Alignment:
Q  368 gccattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatgg 429  Q
    |||||| |||||||| |||| | ||||||||  |||||||| ||||| ||||||||||||||    
T  25869364 gccattgtttctcttcatttgggaaaagagtcctatcaagacatttcacagcctgattatgg 25869303  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 562
Target Start/End: Complemental strand, 23766892 - 23766853
Alignment:
Q  523 tatggaaataaagattcttggactaaattgttcaatattt 562  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  23766892 tatggaaataaagagtcttggactaaattgttcactattt 23766853  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 562
Target Start/End: Complemental strand, 23816740 - 23816701
Alignment:
Q  523 tatggaaataaagattcttggactaaattgttcaatattt 562  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  23816740 tatggaaataaagagtcttggactaaattgttcactattt 23816701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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