View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_21 (Length: 452)
Name: NF18475_low_21
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 12 - 436
Target Start/End: Complemental strand, 46080909 - 46080488
Alignment:
| Q |
12 |
atgaaagagatgaagaatttgatgtttttaagataaaaagggtaatcgattgtaagaataaaaatcaagaaaatgagannnnnnnnngaaagagatagat |
111 |
Q |
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| T |
46080909 |
atgaaagagatgaagaatttgatgttcttaagataaaaatggtaatcgattctgagaataaaaatgaagaaaatgagatttttctttgaaagagatagat |
46080810 |
T |
|
| Q |
112 |
aaatcacccctattcattgacgggtaacttagaagaagaagaagaaaaccatcaaaccacaaatgtaactcgtcatattaacaagaaaatcgttcactta |
211 |
Q |
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| T |
46080809 |
aaatcatccctattcattaacgggtaacttagaagaagaaaaaaaaaaccatgaaaccacaaatgtaactcgtcatgttaacaagaaaatcgttcactta |
46080710 |
T |
|
| Q |
212 |
attagcaaaagccgcatgatgtaattataaattataatcagcacaagaataagcatgattatgttaaagatcactctcatgcatacccaatattaattct |
311 |
Q |
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| T |
46080709 |
attagcaaaagccgcgtgatgtaattataaattataaccaccacaagaataagcatgattatgttaaagatcactctcatgcatacccaatattaattct |
46080610 |
T |
|
| Q |
312 |
acttattcttctccacttatattattgacttgggatattacacattgccgacaagatatcgtggaagaagattattcgctgtttaaagtagtagcaatgt |
411 |
Q |
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| T |
46080609 |
acttattcttctccactta---tattgacttgggatattacacattgccgacaagatatcgtggaagaagattattcgctgtttaaagtagtagcaatgt |
46080513 |
T |
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| Q |
412 |
tgaaagttgaaacaatattggttgg |
436 |
Q |
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| T |
46080512 |
tgaaagttgaaacaatattggttgg |
46080488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 35957026 - 35956981
Alignment:
| Q |
29 |
tttgatgtttttaagataaaaagggtaatcgattgtaagaataaaa |
74 |
Q |
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| T |
35957026 |
tttgatgtttttgagataaaaatggtaattaattgtaagaataaaa |
35956981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 43208792 - 43208734
Alignment:
| Q |
26 |
gaatttgatgtttttaagataaaaagggtaatcgattgtaagaataaaaatcaagaaaa |
84 |
Q |
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||||||||| || |||| ||||||| |||||| ||||||||||||||| || ||||||| |
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| T |
43208792 |
gaatttgatattcttaaaataaaaatggtaattgattgtaagaataaagatgaagaaaa |
43208734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 17736929 - 17736970
Alignment:
| Q |
27 |
aatttgatgtttttaagataaaaagggtaatcgattgtaaga |
68 |
Q |
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| T |
17736929 |
aatttgatattcttaagataaaaatggtaatcgattgtaaga |
17736970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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