View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18475_low_23 (Length: 419)
Name: NF18475_low_23
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 274
Target Start/End: Original strand, 26823694 - 26823966
Alignment:
| Q |
6 |
gtagattattcttaatcaccatcgttatcacaatcctacgcgttaacattaaatcctataaacgtacnnnnnnnntgaaccttcatgatactttctttgt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26823694 |
gtagattattcttaatcaccatcgttatcacaatcctacgcgttaacattaaatcctataaacgtacaaaaaacatgaaccttcatgatactttctttgt |
26823793 |
T |
|
| Q |
106 |
tcttagatatatcatttacttttata----tatgtttaaaatcaatcaaattatcatcaaattattatataagaaagtttaaacgattcctcccattatt |
201 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26823794 |
tcctagatatatcatttacttttatatatatatgtttaaaatcaatcaaattatcatcaaattattatataagaaagtttaaacgattcctcccattatt |
26823893 |
T |
|
| Q |
202 |
ctcacacatatatttattacctaacagaataaacaagactctgatctcaacacaaacaaaaactaagagccag |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26823894 |
ctcacacatatatttattacctaacagaacaaacaagactctgatctcaacacaaacaaaaactaagagccag |
26823966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 26824065 - 26824154
Alignment:
| Q |
311 |
tcaccaacctcgtcatcattattatcatcatggcttatccttatcaaccacaaccttctgcctctgcacctatcacggcttatccttatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26824065 |
tcaccaacctcgtcatcattattatcatcatggcttatccttatcaaccacaaccttctgcctctgcacctatcacggcttatccttatc |
26824154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 26835862 - 26835969
Alignment:
| Q |
157 |
atcaaattattatataagaaagtttaaacgattcctcccattattctcacacatatatttattacctaacagaataaacaagactctgatctcaacacaa |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
26835862 |
atcaaattattatataagaaagtttaaacgatccctctcattattctcacacatatat---ttgcctaacagaacaaacaagattctgatctcatcacaa |
26835958 |
T |
|
| Q |
257 |
acaaaaactaa |
267 |
Q |
| |
|
||||||||||| |
|
|
| T |
26835959 |
acaaaaactaa |
26835969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 26805141 - 26805215
Alignment:
| Q |
122 |
tacttttatatatgtttaaaatcaatcaaattatcatcaaattattatataagaaagtttaaacgattcctccca |
196 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
26805141 |
tactcttatttatgtttaaaatcaatcaaatcatcatcaagttgttatataagaaagtttaaacgatccctccca |
26805215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 26836027 - 26836084
Alignment:
| Q |
323 |
tcatcattattatcatcatggcttatccttatcaaccacaaccttctgcctctgcacc |
380 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26836027 |
tcatcgttactatcatcatggcttatccttatcaaccacaaccttcttcctctgcacc |
26836084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 26805334 - 26805381
Alignment:
| Q |
333 |
tatcatcatggcttatccttatcaaccacaaccttctgcctctgcacc |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26805334 |
tatcatcatggcttatccttatcaaccacaaccatctgcctctgcacc |
26805381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 26824166 - 26824206
Alignment:
| Q |
340 |
atggcttatccttatcaaccacaaccttctgcctctgcacc |
380 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
26824166 |
atggcttatccttgtcaaccacaaccatctgcctctgcacc |
26824206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 26795431 - 26795488
Alignment:
| Q |
323 |
tcatcattattatcatcatggcttatccttatcaaccacaaccttctgcctctgcacc |
380 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||||| | |||| || |||||||||||||| |
|
|
| T |
26795431 |
tcatcatcattgtcaacatggcttatccttatccagcacagccatctgcctctgcacc |
26795488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University