View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_24 (Length: 406)
Name: NF18475_low_24
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 43665936 - 43666324
Alignment:
| Q |
1 |
caattgtttcgggcaccggaaacaacataggttgtggttgggatgaactaccttgtgacccaacaattttgttacaagtttcaataaggcactgtctaca |
100 |
Q |
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| T |
43665936 |
caattgtttcgggcaccggaaacaacataggttgtggttgggatgaactaccttgtgacccaacaattttgttacaagtttcaataaggcactgtctaca |
43666035 |
T |
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| Q |
101 |
tttcggacaagacgaatgcgaacttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtg |
200 |
Q |
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| T |
43666036 |
tttcggacaagacgaatgcgaacttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtg |
43666135 |
T |
|
| Q |
201 |
aactcggacagacatatcacacactccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttga |
300 |
Q |
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| T |
43666136 |
aactccgacagacatatcacacactccgagtccaaactcggcaatttcagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttga |
43666235 |
T |
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| Q |
301 |
ttccagtgtttgccgctcgaactggaatgttgttagcggagcgatcaccactcatcacaactaaattggaacattttaatgcacacctt |
389 |
Q |
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| T |
43666236 |
ttccagtgtttgccgctcgaactggaatgttgttagcggagcgatcaccactcatcacaactaaattggaacattttaatgcacacctt |
43666324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 304
Target Start/End: Original strand, 38840846 - 38841026
Alignment:
| Q |
124 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
223 |
Q |
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| T |
38840846 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcataca |
38840945 |
T |
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| Q |
224 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
304 |
Q |
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| T |
38840946 |
ttctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaatgccttaagagctttcttcttgattcc |
38841026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 304
Target Start/End: Original strand, 38858584 - 38858764
Alignment:
| Q |
124 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
223 |
Q |
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| T |
38858584 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcataca |
38858683 |
T |
|
| Q |
224 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
304 |
Q |
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| T |
38858684 |
ttctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaatgccttaagagctttcttcttgattcc |
38858764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 124 - 304
Target Start/End: Original strand, 38864913 - 38865093
Alignment:
| Q |
124 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
223 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| || || ||||||| |||||| || || || || || ||||| || |||||||| | ||| |
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| T |
38864913 |
ttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataataca |
38865012 |
T |
|
| Q |
224 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
304 |
Q |
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||| | |||||||| || | ||| | |||| |||| || || ||||||| |||| | ||||||||||||||||||||||| |
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| T |
38865013 |
ctctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcc |
38865093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 304
Target Start/End: Original strand, 38827058 - 38827238
Alignment:
| Q |
124 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
223 |
Q |
| |
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||||||||||||| |||||||||||||| || ||||| || || || ||||||| |||||| || || || || ||||| || || |||||||||||||| |
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| T |
38827058 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacaca |
38827157 |
T |
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| Q |
224 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
304 |
Q |
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||| | |||||| | || | ||||| |||| ||| ||||| ||||| | ||| ||||||||||||||||||||||||| |
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| T |
38827158 |
ctctgtatccaaagttggtagttttaactcagttgaataacttactgttggaaatgtcttgagagctttcttcttgattcc |
38827238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 304
Target Start/End: Original strand, 38846666 - 38846846
Alignment:
| Q |
124 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatcacaca |
223 |
Q |
| |
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||||||||||||| |||||||||||||| || ||||| || || || ||||||| |||||| || || || || ||||| || || |||||||||||||| |
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| T |
38846666 |
ttagccatttgtcgatgcaacgaacatggaaaccatgattgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacaca |
38846765 |
T |
|
| Q |
224 |
ctccgagtccaaactcggcaattttagctcatctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
304 |
Q |
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||| | |||||| | || | ||| | |||| ||| ||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
38846766 |
ctctgtatccaaagttggtagtttcaactcagttgaataacttactgttgggaatgtcttgagagctttcttcttgattcc |
38846846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 38851058 - 38850963
Alignment:
| Q |
124 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||| ||| || || || |||||||| || |||||||||| |
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| T |
38851058 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatca |
38850963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 38861458 - 38861553
Alignment:
| Q |
124 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactcggacagacatatca |
219 |
Q |
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| T |
38861458 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatca |
38861553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 304
Target Start/End: Complemental strand, 38850906 - 38850878
Alignment:
| Q |
276 |
aatttcttgagagctttcttcttgattcc |
304 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
38850906 |
aatttcttgagagctttcttcttgattcc |
38850878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 304
Target Start/End: Original strand, 38861610 - 38861638
Alignment:
| Q |
276 |
aatttcttgagagctttcttcttgattcc |
304 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
38861610 |
aatttcttgagagctttcttcttgattcc |
38861638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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