View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18475_low_27 (Length: 382)

Name: NF18475_low_27
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18475_low_27
NF18475_low_27
[»] chr2 (4 HSPs)
chr2 (208-373)||(41282855-41283019)
chr2 (219-373)||(41282649-41282803)
chr2 (254-374)||(1233749-1233870)
chr2 (208-269)||(33361052-33361111)
[»] scaffold0178 (2 HSPs)
scaffold0178 (208-370)||(18486-18646)
scaffold0178 (254-375)||(19102-19226)
[»] chr4 (3 HSPs)
chr4 (5-120)||(52535418-52535533)
chr4 (208-276)||(5469961-5470027)
chr4 (209-253)||(45620874-45620918)
[»] chr5 (1 HSPs)
chr5 (207-350)||(120077-120218)
[»] chr3 (8 HSPs)
chr3 (32-120)||(49349811-49349899)
chr3 (207-271)||(8922888-8922950)
chr3 (207-271)||(41325826-41325888)
chr3 (207-271)||(50107572-50107634)
chr3 (216-271)||(1772880-1772933)
chr3 (208-271)||(8923629-8923690)
chr3 (208-271)||(23514488-23514549)
chr3 (208-271)||(34329130-34329191)
[»] chr8 (2 HSPs)
chr8 (208-271)||(38443039-38443100)
chr8 (208-252)||(38443618-38443662)
[»] chr7 (1 HSPs)
chr7 (227-271)||(48204975-48205017)
[»] chr1 (1 HSPs)
chr1 (208-271)||(1764521-1764582)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 208 - 373
Target Start/End: Complemental strand, 41283019 - 41282855
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 307  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  41283019 catctttactccatttaagtttgctcaatttacatcatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggttgagattaaaacct 41282922  T
Q  308 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacg-ctgcctcctttcttcttcttct 373  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  41282921 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgcctgccacctttcttcttcttct 41282855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 373
Target Start/End: Original strand, 41282649 - 41282803
Alignment:
Q  219 catttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaa-c 317  Q
    ||||||| ||||||| |||||||||||||||||||  || ||||||||| ||| |||||||||| |||||||| |||  ||||||| | ||||||||| |    
T  41282649 catttaagtttgctccatttacaccatttaccatc--atagatgtgtgatatgtggaataaattgaacaaaggattgagattaaaaacatagaaaaaaac 41282746  T
Q  318 aaacttgttactctcttgtatctgaaacaacac-gctgcctcctttcttcttcttct 373  Q
    || ||| ||||| ||||||||||||||||||||   |||||||| ||||||||||||    
T  41282747 aatcttattactttcttgtatctgaaacaacacatttgcctcctgtcttcttcttct 41282803  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 374
Target Start/End: Original strand, 1233749 - 1233870
Alignment:
Q  254 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaacaaacttgttactctcttgtatctgaaacaacac-gc 352  Q
    |||||||||||||||| | || | |||| ||| ||| ||||   ||||||||||||||||||||||||| |||  ||||||||||| ||| ||||||  |    
T  1233749 tcatggatgtgtgacacgtggcaaaaataaaataaatggttaagattaaaaccttagaaaaaacaaactagttcttctcttgtatccgaagcaacacacc 1233848  T
Q  353 tgcctcctttcttcttcttctc 374  Q
     | |||||||||||||||||||    
T  1233849 agtctcctttcttcttcttctc 1233870  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 33361052 - 33361111
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgaca 269  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||   ||||||||||||||||    
T  33361052 catctttgctccatttacctttgctcaatttataccatttacc--ttcatggatgtgtgaca 33361111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 208 - 370
Target Start/End: Original strand, 18486 - 18646
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 307  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  18486 catctttactccatttaagtttgttcaatttacaccatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggctgagattaaaacct 18583  T
Q  308 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgctgcctcctttcttcttct 370  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  18584 tagaaaaaacaaacttgttactctcttgtagctgaaacaacacgccgcctcctttcttcttct 18646  T

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Target: scaffold0178; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 375
Target Start/End: Complemental strand, 19226 - 19102
Alignment:
Q  254 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaa--aaaacaaacttgttactctcttgtatctgaaacaacacg 351  Q
    |||||||||||||||||| | |||||||||||||||||| ||  ||||||| |||||||  ||||||| ||| |||||||||||||||| |||||| ||     
T  19226 tcatggatgtgtgacatgtgtaataaattaaacaaagggctgagattaaaaacttagaaaaaaaacaatcttattactctcttgtatctaaaacaagaca 19127  T
Q  352 c-tgcctcctttcttcttcttctca 375  Q
    | |||||||| ||||||||||||||    
T  19126 cttgcctcctgtcttcttcttctca 19102  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 52535418 - 52535533
Alignment:
Q  5 gaggagtagcaaaggagcagtaatcagaaagtaaaagagtgcaactatgaatcgttggagaagatgtttcggacacggaggatgaagcggctacaaatat 104  Q
    |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  52535418 gaggagaagaaaagaagcagtaatcagaaagtaaaagagtgcaactatgaatcgttggagaagatgtttcgggcacggaggatgaagcggctacacatat 52535517  T
Q  105 tggagggagataggga 120  Q
    ||||| ||||||||||    
T  52535518 tggagagagataggga 52535533  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 5470027 - 5469961
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaa 276  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||  | |||||||||||||||| ||||    
T  5470027 catctttgctccatttaagtttgctcaatttatcccatttacca--ttatggatgtgtgacatgtggaa 5469961  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 45620874 - 45620918
Alignment:
Q  209 atctttactccatttaaatttgctcaatttacaccatttaccatc 253  Q
    |||||| ||||||||||||||||||||||||   |||||||||||    
T  45620874 atctttgctccatttaaatttgctcaatttatctcatttaccatc 45620918  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 350
Target Start/End: Original strand, 120077 - 120218
Alignment:
Q  207 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacc 306  Q
    |||||||| |||||||||  ||| |||||||||| ||||||  ||  | || |||| |||||||  |||| |||| ||| ||| |||||  ||||||||     
T  120077 tcatctttgctccatttagctttcctcaatttaccccattt--caagttatagatgcgtgacatatggaaaaaataaaataaatggttgagattaaaact 120174  T
Q  307 ttagaaaaaacaaacttgttactctcttgtatctgaaacaacac 350  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  120175 ttagaaaaaacaaacttgttcctctcttgtatctgaaacaacac 120218  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 49349899 - 49349811
Alignment:
Q  32 aaagtaaaagagtgcaactatgaatcgttggagaagatgtttcggacacggaggatgaagcggctacaaatattggagggagataggga 120  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||| | ||||||||||||||| ||||  ||| |||  ||||||||||    
T  49349899 aaagtaaaagcgtggaactatgaatcgttggagaagatggttcgggctcggaggatgaagcggttacacgtatgggaaagagataggga 49349811  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 8922888 - 8922950
Alignment:
Q  207 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  8922888 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 8922950  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 41325826 - 41325888
Alignment:
Q  207 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  41325826 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 41325888  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 50107572 - 50107634
Alignment:
Q  207 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||||||| ||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  50107572 tcatctttactacatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 50107634  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 1772880 - 1772933
Alignment:
Q  216 ctccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    |||||||||| |||||||||||||| ||||||||  | |||||||| |||||||||    
T  1772880 ctccatttaagtttgctcaatttaccccatttac--tatcatggatatgtgacatg 1772933  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 8923690 - 8923629
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||| ||||||||   ||||||| |||||| ||||||||||  ||||||||||||||||||    
T  8923690 catctttgctccatttgggtttgctccatttaccccatttacca--tcatggatgtgtgacatg 8923629  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 23514549 - 23514488
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||| ||||||||   |||||||||||||| ||||||||  | ||||||||||||||||||    
T  23514549 catctttgctccatttgcctttgctcaatttaccccatttac--tatcatggatgtgtgacatg 23514488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 34329191 - 34329130
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||| || ||||||  |||||||||||||| ||||||||  | ||||||||||||||||||    
T  34329191 catctttgcttcatttatttttgctcaatttactccatttac--tatcatggatgtgtgacatg 34329130  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 38443039 - 38443100
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||| |||||||||| | ||||| |||||| ||||||||||  ||||||||||||||||||    
T  38443039 catctttgctccatttaagtctgctccatttaccccatttacca--tcatggatgtgtgacatg 38443100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 38443662 - 38443618
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccat 252  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||    
T  38443662 catctttgctccatttaagtttgctccatttaccccatttaccat 38443618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 48205017 - 48204975
Alignment:
Q  227 tttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||    
T  48205017 tttgctccatttacaccatttacca--tcatggatgtgtgacatg 48204975  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 1764521 - 1764582
Alignment:
Q  208 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 271  Q
    ||||||| |||||||||| |||||||||||||| | ||||| ||  |||||||||| |||||||    
T  1764521 catctttgctccatttaagtttgctcaatttaccctatttatca--tcatggatgtatgacatg 1764582  T

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