View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_30 (Length: 371)
Name: NF18475_low_30
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 59 - 354
Target Start/End: Complemental strand, 20910157 - 20909862
Alignment:
| Q |
59 |
ctggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaag |
158 |
Q |
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| T |
20910157 |
ctggacgccgatagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaag |
20910058 |
T |
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| Q |
159 |
cacaaaaagcagaacgcttgaacttgaagccatcttttgctataactagaaagtaaaagaactcgaaaatatttggtgtggnnnnnnngaagtgatgcta |
258 |
Q |
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| T |
20910057 |
cacaaaaagcagaatgcttgaacttgaagccatcttttgctataactagaaagtaaaagaactcgaaaatatttggtgtggaaaaaaagaagtgatgcta |
20909958 |
T |
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| Q |
259 |
gggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttagggcaact |
354 |
Q |
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| T |
20909957 |
gggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttagggcaact |
20909862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 61 - 349
Target Start/End: Complemental strand, 20912898 - 20912609
Alignment:
| Q |
61 |
ggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
160 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20912898 |
ggacgatgaaagaaagttttctcatcatttaaccccttatca---ctaaccccaagcttccttgcatcaatgctactgcaaacaagagcaccaagaagca |
20912802 |
T |
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| Q |
161 |
caaaaagcagaacgcttgaacttgaagccatcttttgctata----actagaaagt-aaaagaactcgaaaatatttggtgtggnnnnnnngaagtgatg |
255 |
Q |
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| T |
20912801 |
caaaaagcagaacacttgaacttgaagccatcttgtgctatatatgtctagaaagtaaaaagaagtttaaaatatttggtgtggaaaaaatgaagtgatg |
20912702 |
T |
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| Q |
256 |
ctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttaggg |
349 |
Q |
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| T |
20912701 |
ctagggtttatatagcaaatgcc-aagggcaaggtttaaccaaaacattaattaggaactttgaaattactatgagaatgctttaattttaggg |
20912609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 61 - 349
Target Start/End: Complemental strand, 20921016 - 20920727
Alignment:
| Q |
61 |
ggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
160 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20921016 |
ggacgatgaaagaaagttttctcatcatttaaccccttatca---ctaaccccaagcttccttgcatcaatgctactgcaaacaagagcaccaagaagca |
20920920 |
T |
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| Q |
161 |
caaaaagcagaacgcttgaacttgaagccatcttttgctata----actagaaagt-aaaagaactcgaaaatatttggtgtggnnnnnnngaagtgatg |
255 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||| | |||||||||||||||| ||||||||| |
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| T |
20920919 |
caaaaagcagaacacttgaacttgaagccatcttgtgctatatatgtctagaaagtaaaaagaagtttaaaatatttggtgtggaaaaaatgaagtgatg |
20920820 |
T |
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| Q |
256 |
ctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttaggg |
349 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
20920819 |
ctagggtttatatagcaaatgcc-aagggcaaggtttaaccaaaacattaattaggaactttgaaattactatgagaatgctttaattttaggg |
20920727 |
T |
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