View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_35 (Length: 362)
Name: NF18475_low_35
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 22474398 - 22474046
Alignment:
| Q |
1 |
cacgaacatcacggatgttctcaccaactcatcaatggcctacttggagtaatgatttccctaaaccaactgcaaggaatgccaatgtgtgtccagttaa |
100 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22474398 |
cacgaacatcactgatgttctcaccaactcatcaacggcctacttggagtgatgatttccctaaaccaactgcaaggaatatcaatgtgtgtccagttaa |
22474299 |
T |
|
| Q |
101 |
agtttctcaaccaacacatattccaattacccatgttccaaatccacccttgccacaaagagtggtcataggaacataattaaggcagctgccaaaatta |
200 |
Q |
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|||||| |||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22474298 |
agtttcccaaccaacacatattctaattactcatgttccgaatccaccctttccacaaagagaggtcataggaacataattaaggcagctgccaaaatta |
22474199 |
T |
|
| Q |
201 |
cacatgttccggttactcaagcattctcaaattcaaggaagagacctaacaagtttcctaaagtagaaaaacaagagaatttaactcacatgaatgagtc |
300 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22474198 |
cacatattccagttactcaagcattctcaaattcaaggaagagacctaacatgtttcctaaagtagaaaaacaagagaatttaactcacatgaatgagtc |
22474099 |
T |
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| Q |
301 |
ggctatagctagaaatttgcaaggtaacacaagagaagttaaactcagtacct |
353 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
22474098 |
ggctatagctacaaatttgcaaggtaacacaagagaagttaaactcggtacct |
22474046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 22474435 - 22474780
Alignment:
| Q |
1 |
cacgaacatcacggatgttctcaccaactcatcaatggcctacttggagtaatgatttccctaaaccaactgcaaggaatgccaatgtgtgtccagttaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||| |
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| T |
22474435 |
cacgaacgtcacggatgttctcaccaactcatcaagggcctacttggagtcatgatttccctaaaccatctgcaaggaatacctatgtgtgttgagttaa |
22474534 |
T |
|
| Q |
101 |
agtttctcaaccaacacatattccaattacccatgttccaaatccaccct-tgccacaaagagtggtcataggaacataattaaggcagctgccaaaatt |
199 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||| | |||||| |
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| T |
22474535 |
agtttctcaaccgacacatattccaattactcatgttccaaatccaccttctgccacaaagaatggtaataggaacataattaaggcagctactaaaatt |
22474634 |
T |
|
| Q |
200 |
acacatgttccggttactcaagcattctcaaattcaaggaagagacctaacaagtttcctaaagtagaaaaacaagagaatttaactcacatgaatgagt |
299 |
Q |
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|||||| |||| |||||||||||||||||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22474635 |
acacatattccagttactcaagcattctcaaattaaaggaagaaacctaaaaagttttctaaagtagaaaaacaagagaatttaactcacatgaatgagt |
22474734 |
T |
|
| Q |
300 |
cggctatagctagaaatttgcaaggtaacacaagagaagttaaact |
345 |
Q |
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| |||||||||| ||||||||| |||||||||||||||||| |||| |
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| T |
22474735 |
cagctatagctacaaatttgcagggtaacacaagagaagttgaact |
22474780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 19213155 - 19212883
Alignment:
| Q |
1 |
cacgaacatcacggatgttctcaccaactcatcaatggcctacttggagtaatgatttccctaaaccaactgcaaggaatgccaatgtgtgtccagttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||| || | ||||||||||||| ||| | |
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| T |
19213155 |
cacgaacatcacggatgttctcaccagctcaccaagggcctacttggagccatgatttccccaa---------------taccaatgtgtgtccggttca |
19213071 |
T |
|
| Q |
101 |
agtttctcaaccaacacatattccaattacccatgttccaaatccaccct-tgccacaaagagtggtcataggaacataattaaggcagctgccaaaatt |
199 |
Q |
| |
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|||||||||||| ||||||||||||| ||| ||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||| || |
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| T |
19213070 |
agtttctcaaccgacacatattccaactactcatgttccaaatccaccttctgccacaaa---------taggaacataactaaggcagctgccaaagtt |
19212980 |
T |
|
| Q |
200 |
acacatgttccggttactcaagcattctcaaattcaaggaagagacctaacaagtttcctaaagtagaaaaacaagagaatttaactcacatgaatg |
296 |
Q |
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|| ||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
19212979 |
actcatattccagttactcgtgcattctcaaattcaaggacgagacctaacaagtttcctgaagttgaaaaacaagagaatttaactcagatgaatg |
19212883 |
T |
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