View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_36 (Length: 359)
Name: NF18475_low_36
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 42325105 - 42324876
Alignment:
| Q |
1 |
tgtaggtgatgacagaccctgatgttcctggccccagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatatagtaccat |
100 |
Q |
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| T |
42325105 |
tgtaggtgatgacagaccctgatgttcctggccctagtgatccttatctaagagaacacttgcactggtaaatataatatataatgagatatagtaccat |
42325006 |
T |
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| Q |
101 |
atatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatgctacatt |
200 |
Q |
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| T |
42325005 |
atatctagaaattaaccagttattttgtttgattaaattctgttgtatttatttaatacaggattgtgacagatattcctggaacaacagatgctacatt |
42324906 |
T |
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| Q |
201 |
tggtaggtattttaatggttgaaaaatgcc |
230 |
Q |
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| T |
42324905 |
tggtaggtattttaatggttgaaaaatgcc |
42324876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 248 - 347
Target Start/End: Complemental strand, 42324848 - 42324749
Alignment:
| Q |
248 |
gatgagagagaatataatgacatattgaaattgtaaaacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
347 |
Q |
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| T |
42324848 |
gatgagagagaatataatgacatattgaaattgtatcacacacagggaaagaagtagtgagctatgagataccaaagccaaatataggtatacacaggtt |
42324749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 26206165 - 26206116
Alignment:
| Q |
21 |
gatgttcctggccccagtgatccttatctaagagaacacttgcactggta |
70 |
Q |
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| T |
26206165 |
gatgttcctggcccaagtgatccttatatgaaagaacacttacactggta |
26206116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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