View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_47 (Length: 303)
Name: NF18475_low_47
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_47 |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 40812425 - 40812298
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgacaagaaaggtggaagaga |
132 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
40812425 |
atcacttgttctccactccaatggttgc-actgtctatgattcaaagggtaacatcgtttatcgagttgata---actatgacaagaaaggtggaagaga |
40812330 |
T |
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| Q |
133 |
agtgaatctcatggatctacaaggcaatgttc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
40812329 |
agtgaatctcatggatctacaaggcaatgttc |
40812298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 40817584 - 40817465
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgacaagaaaggtggaagaga |
132 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||| |||| |||||||||| |||||| ||||||| |
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| T |
40817584 |
atcacttgttcttcactccaatggttgc-actgtctatgattcaaacggtaacatcgtttatcgagttgata---actatgacaaaaaaggtagaagaga |
40817489 |
T |
|
| Q |
133 |
agtgaatctcatggatctacaagg |
156 |
Q |
| |
|
||||||||| |||||||||||||| |
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|
| T |
40817488 |
agtgaatctaatggatctacaagg |
40817465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 40805732 - 40805613
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgacaagaaaggtggaagaga |
132 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |||| || |||||||||| || ||||||||||| |
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| T |
40805732 |
atcacttgttcttcactccaatggtt-gtactgcctatgattcaaatggtgacatcgtttaccgagttga---aaactatgacagaaagggtggaagaga |
40805637 |
T |
|
| Q |
133 |
agtgaatctcatggatctacaagg |
156 |
Q |
| |
|
||| ||||||||| ||||| |||| |
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| T |
40805636 |
agtaaatctcatgaatctaaaagg |
40805613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 40807328 - 40807205
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgacaagaaaggtggaagaga |
132 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||| | || |||| |||| ||||| |||||| |||||| |
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| T |
40807328 |
atcacttgttctacactccaatggttgc-actgtctatgattcaaagggtaacatcgtttatcgtgttgata---actacgacaaaaaaggtaaaagaga |
40807233 |
T |
|
| Q |
133 |
agtgaatctcatggatctacaaggcaat |
160 |
Q |
| |
|
||| ||||||||||||| |||||||||| |
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|
| T |
40807232 |
agtcaatctcatggatcaacaaggcaat |
40807205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 40826245 - 40826118
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgacaagaaaggtggaagaga |
132 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| ||||||||||||||| |||||||||| |||| || |||||||||| || |||||||| || |
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| T |
40826245 |
atcacttgttctacactctaatggttgc-actgtttatgattcaaatggtagcatcgtttatcgagttga---aaactatgacagaaagggtggaaggga |
40826150 |
T |
|
| Q |
133 |
agtgaatctcatggatctacaaggcaatgttc |
164 |
Q |
| |
|
||| | ||||||| ||||| |||| ||||||| |
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| T |
40826149 |
agttactctcatgaatctaaaaggaaatgttc |
40826118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 14780 - 14899
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgacaagaaaggtggaagaga |
132 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||| |||| |||||||||| |||||| ||||||| |
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| T |
14780 |
atcacttgttcttcactccaatggttgc-actgtctatgattcaaacggtaacatcgtttatcgagttgata---actatgacaaaaaaggtagaagaga |
14875 |
T |
|
| Q |
133 |
agtgaatctcatggatctacaagg |
156 |
Q |
| |
|
||||||||| |||||||||||||| |
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|
| T |
14876 |
agtgaatctaatggatctacaagg |
14899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 8912 - 9027
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgacaagaaaggtggaagaga |
132 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |||| || | |||||||||| || ||||||||||| |
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|
| T |
8912 |
atcacttgttcttcactccaatggtt-gtactgcctatgattcaaatggtgacatcgtttaccgagttgaaa--aactatgacagaaagggtggaagaga |
9008 |
T |
|
| Q |
133 |
agtgaatctcatggatcta |
151 |
Q |
| |
|
||| ||||||||| ||||| |
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|
| T |
9009 |
agtaaatctcatgaatcta |
9027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 7298 - 7422
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgac-aagaaaggtggaagag |
131 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||| | || || |||||| ||| || |||||| ||||| |
|
|
| T |
7298 |
atcacttgttctacactccaatggttgc-actgtctatgattcaaagggtaacatcgtttatcgtgttga---taactacgacaaaaaaaggtaaaagag |
7393 |
T |
|
| Q |
132 |
aagtgaatctcatggatctacaaggcaat |
160 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |
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|
| T |
7394 |
aagtcaatctcatggatcaacaaggcaat |
7422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 3815 - 3701
Alignment:
| Q |
33 |
atcacttgttcttcactccaatggttggtactgtctatgattcaaatggtcacatcgtttatagagtcgatattaactatgacaagaaaggtggaagaga |
132 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| ||||||||||||||| |||||||||| |||| || |||||||||| || |||||||| || |
|
|
| T |
3815 |
atcacttgttctacactctaatggttgc-actgtttatgattcaaatggtagcatcgtttatcgagttga---aaactatgacagaaagggtggaaggga |
3720 |
T |
|
| Q |
133 |
agtgaatctcatggatcta |
151 |
Q |
| |
|
||| | ||||||| ||||| |
|
|
| T |
3719 |
agttactctcatgaatcta |
3701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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