View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_49 (Length: 283)
Name: NF18475_low_49
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 17104785 - 17104519
Alignment:
| Q |
1 |
taatatattagctacatcaacaaata----atgttgaggcagataatatgtaataaaatatatgttcataaggtgtgagctcagtggtnnnnnnntgttc |
96 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17104785 |
taatatattagctacatcaacaaatattgtatgttgaggcagataatatgtaataaaatatatgttcataaggtgtgagctcagtggtaaaaaattgttc |
17104686 |
T |
|
| Q |
97 |
ctgtaacattaagggaagagtttgaattccatcgaaaacggttgtaaaatatatattaatgattttatcaaaattttagtataagcacaaatgaagaaaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
17104685 |
ctgtaacattaagggaagagtttgaattccatcgaaaacggttgtaaaatatatattaatgattttatcaaaattttagtgtaaacacaaatgaagaaaa |
17104586 |
T |
|
| Q |
197 |
aagttgagatttttaaaaccttggataggaactcttcaggtgaaccatagtcggtgatggacttctt |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17104585 |
aagttgagatttttaaaaccttggataggaactcttcaggtgaaccatagtcggtgatggacttctt |
17104519 |
T |
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