View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_5 (Length: 654)
Name: NF18475_low_5
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 36256236 - 36256822
Alignment:
| Q |
1 |
aaggatgagagagacaagatgtggaatctagtatcgatgaaccgtgagtccatgataatatgaaataacctacttgatcatatgggttgtagctaactag |
100 |
Q |
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| T |
36256236 |
aaggatgagagagacaagatgtggaatctagtatcgatgaaccgtgagtccatgataatatgaaataacctacttgatcatatgggttgtagctaactag |
36256335 |
T |
|
| Q |
101 |
acccccatgatcaaaatgatatactagatcatgctagatggacccttctttggaaacatttgatgcaactcactgctatataaaattgttttgtcttgca |
200 |
Q |
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| T |
36256336 |
atcccaatggtcaaaatgatatactagatcatgctagatggacccttctatgaaaacatttgatgcaactcactgctatataaaattgttttgtcttgca |
36256435 |
T |
|
| Q |
201 |
tttgaaacaaattttgactcttgtcttggaatatatactcgagttgaattttacaaaatctcataattgatccaatcaaactcttttagtttaagttgaa |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36256436 |
tttgaaacaaattttgactcttgtcttggaatagatactcgagttgaattttacaaaatctcataattgatccaatcaaactcttttagtttaggttgaa |
36256535 |
T |
|
| Q |
301 |
atgttgaatacccaacctcagctgtgtggagaaattttgcattttctagttgatgttattatctcgtgttatggctttttcctctataaatttctctgaa |
400 |
Q |
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| T |
36256536 |
atgttgaatacccaacctcagctgtgtggagaaattttgcattttctagttgatgttattatctcgtgttatggctttttcctctataaatttctctgaa |
36256635 |
T |
|
| Q |
401 |
tttttgttaacgggttaatcaataaaagaatacatggaaatcatagttttagaaaacatcgaaagcattgcaaaccacaacatgaagccaatataaggtt |
500 |
Q |
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| T |
36256636 |
tttttgttaacgggttaatcaataaaagaatacatggaaatcatagttttagaaaacatcgaaagcattgcaaaccacagcatgaagccaatataaggtt |
36256735 |
T |
|
| Q |
501 |
tggttctggtgtatcagatgtgtacatagggcaagacttagctttggaatgtgatcatcaattaatcttgaacaaaaaactaaactc |
587 |
Q |
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| T |
36256736 |
tggttctggtgtatcagatgtgtacatagggcaagacttagctttggaatgtgatcatcaattaatcttgaacaaaaaactaaactc |
36256822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 36268711 - 36268658
Alignment:
| Q |
463 |
aagcattgcaaaccacaacatgaagccaatataaggtttggttctggtgtatca |
516 |
Q |
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| T |
36268711 |
aagcattgcaaccaacagcatgaagccaatataaggtttaattctggtgtatca |
36268658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 36263203 - 36263264
Alignment:
| Q |
260 |
ctcataattgatccaatcaaactcttttagtttaagttgaaatgttgaatacccaacctcag |
321 |
Q |
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| T |
36263203 |
ctcataattaatccaatctcattcttttaaattaggttgaattgttgaatacccaacctcag |
36263264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 19359933 - 19360037
Alignment:
| Q |
254 |
caaaatctcataattgatccaatcaaactcttttagtttaagttgaaatgttgaatacccaacctc--agctgtgtggagaaattttgcatt-ttctagt |
350 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||| || ||| || ||| | ||||| ||||||||| ||||||| |
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| T |
19359933 |
caaaacctcataattgatccaatcaaactcttttagtttaggttgaaatgttaaataccgaaactcagagttgtctagagaacttttgcattcttctagt |
19360032 |
T |
|
| Q |
351 |
tgatg |
355 |
Q |
| |
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||||| |
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| T |
19360033 |
tgatg |
19360037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 451 - 516
Target Start/End: Original strand, 19360104 - 19360169
Alignment:
| Q |
451 |
agaaaacatcgaaagcattgcaaaccacaacatgaagccaatataaggtttggttctggtgtatca |
516 |
Q |
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|||| |||| ||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
19360104 |
agaatacatggaaagcactgcaacccacatcatgaagccagtataaggtttggttctggtgtatca |
19360169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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