View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_52 (Length: 267)
Name: NF18475_low_52
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26388564 - 26388317
Alignment:
| Q |
1 |
aaatgaatgttggaaggtcttgacggctacaaagtgatgcacaatactcaagttgtgctaaaggatacttagcacatcagaggactcaacaattcatatn |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26388564 |
aaatgaatgttggaagatcttgacggctacaaagtgatgaacaatactcaagttgtgctacaggatacttagcacatcagaggactcaacaattcatata |
26388465 |
T |
|
| Q |
101 |
nnnnnnntgagcaaaagatcatggttgatgactataaagtgaagcatcaatactcagattgtgctcaagatgaatagcacatnnnnnnnnccatctagtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26388464 |
aaaaaaatgagcaaaagatcatggttgatgactataaagtgaagcatcaatactcagattgtgctcaagatgaatagcacataaaaaaaaccatctagtc |
26388365 |
T |
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| Q |
201 |
aataaaaggagacaaccaaatgcaacatgtaaagatatggcagaacaac |
249 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26388364 |
aataaaaggagacaaccaaatgcaacatgt-aagatatggcagaacaac |
26388317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1773939 - 1774001
Alignment:
| Q |
1 |
aaatgaatgttggaaggtcttgacggctacaaagtgatgc-acaatactcaagttgtgctaaa |
62 |
Q |
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| T |
1773939 |
aaatgaatgttagaaggtcttgacgactacaaaatgaagcaacaatactcaagttgtgctaaa |
1774001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 1774021 - 1774078
Alignment:
| Q |
110 |
agcaaaagatcatggttgatgactataaagtgaagcatcaatactcagattgtgctca |
167 |
Q |
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|||||| || ||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1774021 |
agcaaaggagcatggttgatggctattgagtgaagcatcaatactcagattgtgctca |
1774078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19473234 - 19473318
Alignment:
| Q |
1 |
aaatgaatgttggaaggtcttgacggctacaaagtgatgcacaatactcaagttgtgctaaaggatacttagcacatcagaggac |
85 |
Q |
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||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||| | || |||||||||| |||||| |
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| T |
19473234 |
aaatgaatgttaaaaggtcttgatgactacaaagtgatgcacaatactcaagctgtgctaaaaggtagttagcacatctgaggac |
19473318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19544159 - 19544243
Alignment:
| Q |
1 |
aaatgaatgttggaaggtcttgacggctacaaagtgatgcacaatactcaagttgtgctaaaggatacttagcacatcagaggac |
85 |
Q |
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||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||| | || |||||||||| |||||| |
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| T |
19544159 |
aaatgaatgttaaaaggtcttgatgactacaaagtgatgcacaatactcaagctgtgctaaaaggtagttagcacatctgaggac |
19544243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 19588537 - 19588453
Alignment:
| Q |
1 |
aaatgaatgttggaaggtcttgacggctacaaagtgatgcacaatactcaagttgtgctaaaggatacttagcacatcagaggac |
85 |
Q |
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||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||||||| | || |||||||||| |||||| |
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| T |
19588537 |
aaatgaatgttaaaaggtcttgatgactacaaagtgatgcacaatactcaagctgtgctaaaaggtagttagcacatctgaggac |
19588453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19473327 - 19473371
Alignment:
| Q |
1 |
aaatgaatgttggaaggtcttgacggctacaaagtgatgcacaat |
45 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
19473327 |
aaatgaatgttaaaaggtcttgatggctacaaagtgatgcacaat |
19473371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19544252 - 19544296
Alignment:
| Q |
1 |
aaatgaatgttggaaggtcttgacggctacaaagtgatgcacaat |
45 |
Q |
| |
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||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
19544252 |
aaatgaatgttaaaaggtcttgatggctacaaagtgatgcacaat |
19544296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19588444 - 19588400
Alignment:
| Q |
1 |
aaatgaatgttggaaggtcttgacggctacaaagtgatgcacaat |
45 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
19588444 |
aaatgaatgttaaaaggtcttgatggctacaaagtgatgcacaat |
19588400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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