View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_54 (Length: 251)
Name: NF18475_low_54
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 29021488 - 29021268
Alignment:
| Q |
15 |
gacggtatcatattccattacctccgaaccagacgactatgcaattgcaatgtaagttacttcacatttcattgacttgttggtgagtttcaagggttta |
114 |
Q |
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| T |
29021488 |
gacggtatcatattccattacctccgaaccagacgactatgcaattgcaatgtaagttacttcacatttcattgacttgttggtgagtttcaagggttta |
29021389 |
T |
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| Q |
115 |
acttgtcttgatttgttatatgtatgcctgcttgttttttccttaacttactgtttaattaattttgcctttggtcaagaacaagatgaatcaaatgatt |
214 |
Q |
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| T |
29021388 |
acttgtcttgatttgttatatgtatgcctgcttgttttttccttaacttactgtttaattaattttgcctttggtcaagaacaagatgaaccaaatgatt |
29021289 |
T |
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| Q |
215 |
aaatctatttgcaaccttaat |
235 |
Q |
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| T |
29021288 |
aaatctatttgcaaccttaat |
29021268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 28673638 - 28673751
Alignment:
| Q |
15 |
gacggtatcatattccattacctccgaaccagacgactatgcaattgcaatgtaagttacttcacatttcattgacttgttggtgagtttcaagggttta |
114 |
Q |
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| T |
28673638 |
gacggtatcaatttccattacttccgaaccagaggactatgca------atgtaagttacttaacatttcattgatccgttggtgagtttaaagggttta |
28673731 |
T |
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| Q |
115 |
acttgtcttgatttgttata |
134 |
Q |
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| T |
28673732 |
acttgtcttgatttgttata |
28673751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 28673820 - 28673896
Alignment:
| Q |
157 |
ttaacttactgtttaattaattttgcctttggtcaagaacaagatgaatcaaatgattaaatctatttgcaaccttaat |
235 |
Q |
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| T |
28673820 |
ttaaattagtgtttaattaatttt-cctttggtcaa-aacaagatgaatgaaatcattaaatctatttgcaaccttaat |
28673896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 28696035 - 28696111
Alignment:
| Q |
157 |
ttaacttactgtttaattaattttgcctttggtcaagaacaagatgaatcaaatgattaaatctatttgcaaccttaat |
235 |
Q |
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| T |
28696035 |
ttaaattagtgtttaattaatttt-cctttggtcaa-aacaagatgaatgaaatcattaaatctatttgcaaccttaat |
28696111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 28532449 - 28532392
Alignment:
| Q |
73 |
acttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
130 |
Q |
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| T |
28532449 |
acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgt |
28532392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 3438016 - 3438071
Alignment:
| Q |
75 |
ttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
130 |
Q |
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| T |
3438016 |
ttcacacttcattgacttgttggtgagtctgaagggattaacttgtcttgatttgt |
3438071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 10615326 - 10615269
Alignment:
| Q |
72 |
tacttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttg |
129 |
Q |
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| T |
10615326 |
tacttcacattttattgactcattggtgagtttgaagggcttgacttgtcttgatttg |
10615269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 6588694 - 6588750
Alignment:
| Q |
74 |
cttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt |
130 |
Q |
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| T |
6588694 |
cttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgt |
6588750 |
T |
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