View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_59 (Length: 239)
Name: NF18475_low_59
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_59 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 46165428 - 46165637
Alignment:
| Q |
12 |
cagagaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgt |
111 |
Q |
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| T |
46165428 |
cagagaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgt |
46165527 |
T |
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| Q |
112 |
ccgaagctgcaacctcaaacaatattattgagctgaaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctttgtaatactacttccgt |
211 |
Q |
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| T |
46165528 |
ctgaagctgcaacctcaaacaatattattgagctgcaggtaaaattttgcttggtttgaaatacaaaaaattcttatgatcttcgtaatactacctccgt |
46165627 |
T |
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| Q |
212 |
ccctaactat |
221 |
Q |
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|||||||||| |
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| T |
46165628 |
ccctaactat |
46165637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 46158499 - 46158625
Alignment:
| Q |
95 |
acttgcagggatagtgtccgaagctgcaacctcaaacaatattattgagctgaaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctt |
194 |
Q |
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||||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46158499 |
acttgcaaggatagtgtttgaagcagcaacctcaaacaatattattgagctgcaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctt |
46158598 |
T |
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| Q |
195 |
tgtaatactacttccgtccctaactat |
221 |
Q |
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| T |
46158599 |
cgtaatactacttccgtccctaactat |
46158625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 46237798 - 46237715
Alignment:
| Q |
20 |
atcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagg |
103 |
Q |
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| T |
46237798 |
atcagcaagctatcaattctcaactaagttattgagagacttcagcagctcactgtttaaatctaatgcggtaaaacttgcagg |
46237715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 14769 - 14650
Alignment:
| Q |
15 |
agaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgtccg |
114 |
Q |
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| T |
14769 |
agaaaattagcaagctatcgattctcaactaagttattgagagaattaggcagatccgtgttcaaatccagtgcagtaaaacttgta-ggataatgtctg |
14671 |
T |
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| Q |
115 |
aagctgcaacctcaaacaata |
135 |
Q |
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| T |
14670 |
aagctgcaatctcaaacaata |
14650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 3839287 - 3839168
Alignment:
| Q |
15 |
agaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgtccg |
114 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||| || |||| || ||||||||||| | ||| |||||||||| | ||||| |||| | |
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| T |
3839287 |
agaaaattagcaagctatcgattctcaactaagttattgagagaattaggcagatccgtgttcaaatccagtgcagtaaaacttgta-ggataatgtctg |
3839189 |
T |
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| Q |
115 |
aagctgcaacctcaaacaata |
135 |
Q |
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| T |
3839188 |
aagctgcaatctcaaacaata |
3839168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 26777209 - 26777250
Alignment:
| Q |
13 |
agagaaaatcagcaagctatcaattctcaactaagttattga |
54 |
Q |
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| T |
26777209 |
agagcaaatctgcaagctatcaattctcaacaaagttattga |
26777250 |
T |
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