View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_65 (Length: 235)
Name: NF18475_low_65
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_65 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37959435 - 37959652
Alignment:
| Q |
1 |
ccaagcgaatagcaaaagttatgacgctgaaatctaattaaagccaccagatttcagtctcatagctctgccccagcggtctccgcacaacaccaaaggg |
100 |
Q |
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| T |
37959435 |
ccaagcaaatagcaaaagttatgacgctgaaatctaattaaagccaccagatttcagtctcatagctctgccccagcggtctccggacaacaccaaaggg |
37959534 |
T |
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| Q |
101 |
gatcacaccgaaagaccaagccactgccgcgcgccaaggaggaacaaaacgcagcagcagccactgcaaacctggtaatttgagattaatttaacttttc |
200 |
Q |
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| T |
37959535 |
gatcacaacaaaagaccaagccactgc--cgcgccaaggaggaacaaaacgcagcagcagccactgcaaacctgataatttgagattaatttaacttttc |
37959632 |
T |
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| Q |
201 |
aatccaaagtgtgtaataat |
220 |
Q |
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| T |
37959633 |
aatccaaagtgtgtaataat |
37959652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 37953562 - 37953606
Alignment:
| Q |
176 |
taatttgagattaatttaacttttcaatccaaagtgtgtaataat |
220 |
Q |
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| T |
37953562 |
taatttgagattgatttaactcttcaatccaaaatgtataataat |
37953606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 150184 - 150237
Alignment:
| Q |
15 |
aaagttatgacgctgaaatctaattaaagccaccagatttcagtctcatagctc |
68 |
Q |
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| T |
150184 |
aaagttatgacgttgaaatctagttaaaggcaccatatttcattcccatagctc |
150237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 179024 - 179077
Alignment:
| Q |
15 |
aaagttatgacgctgaaatctaattaaagccaccagatttcagtctcatagctc |
68 |
Q |
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| T |
179024 |
aaagttatgacgttgaaatctagttaaaggcaccatatttcattcccatagctc |
179077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 32263904 - 32263859
Alignment:
| Q |
13 |
caaaagttatgacgctgaaatctaattaaagccaccagatttcagt |
58 |
Q |
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| T |
32263904 |
caaaagttatgacactaaaatataattaacgccaccagatttcagt |
32263859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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