View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18475_low_69 (Length: 227)

Name: NF18475_low_69
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18475_low_69
NF18475_low_69
[»] chr8 (2 HSPs)
chr8 (1-222)||(42789164-42789385)
chr8 (1-222)||(42798702-42798923)
[»] chr6 (1 HSPs)
chr6 (1-219)||(34566837-34567055)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42789164 - 42789385
Alignment:
Q  1 cattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42789164 cattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatg 42789263  T
Q  101 tgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42789264 tgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctg 42789363  T
Q  201 agataaggtggatgttcttttt 222  Q
    ||||||||||||||||||||||    
T  42789364 agataaggtggatgttcttttt 42789385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42798702 - 42798923
Alignment:
Q  1 cattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42798702 cattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactatagacaatg 42798801  T
Q  101 tgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42798802 tgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctg 42798901  T
Q  201 agataaggtggatgttcttttt 222  Q
    ||||||||||||||||||||||    
T  42798902 agataaggtggatgttcttttt 42798923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 34566837 - 34567055
Alignment:
Q  1 cattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatcttttgagagactataaacaatg 100  Q
    ||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  34566837 cattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatctttagaaagactataaacaatg 34566936  T
Q  101 tgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactgatcctgagtagatttcgtctg 200  Q
    |||  ||| || || ||||||||| |||||| ||| |||||||| ||||||||||  || |||   |||   || ||||| || ||||||||||||||||    
T  34566937 tgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactgagcccgagtagatttcgtctg 34567036  T
Q  201 agataaggtggatgttctt 219  Q
    ||| |||||| ||||||||    
T  34567037 agacaaggtgtatgttctt 34567055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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