View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18475_low_7 (Length: 637)

Name: NF18475_low_7
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18475_low_7
NF18475_low_7
[»] chr8 (16 HSPs)
chr8 (13-621)||(9475686-9476288)
chr8 (21-226)||(5700168-5700382)
chr8 (33-226)||(28345315-28345517)
chr8 (113-214)||(29918520-29918621)
chr8 (48-226)||(8545411-8545598)
chr8 (119-215)||(30903965-30904061)
chr8 (113-197)||(12468309-12468393)
chr8 (113-207)||(6388586-6388680)
chr8 (127-212)||(17108303-17108388)
chr8 (175-215)||(14186295-14186335)
chr8 (113-224)||(36274956-36275066)
chr8 (159-213)||(14155491-14155545)
chr8 (52-102)||(17084304-17084354)
chr8 (180-226)||(30481483-30481529)
chr8 (181-226)||(24870086-24870131)
chr8 (186-226)||(8031124-8031164)
[»] chr5 (24 HSPs)
chr5 (41-215)||(17153001-17153184)
chr5 (108-213)||(12457425-12457530)
chr5 (33-213)||(40187732-40187921)
chr5 (33-225)||(7350471-7350672)
chr5 (131-226)||(29664902-29664997)
chr5 (117-226)||(27900464-27900573)
chr5 (108-213)||(8020523-8020628)
chr5 (156-215)||(32575012-32575071)
chr5 (33-226)||(38972746-38972948)
chr5 (127-224)||(6810085-6810182)
chr5 (13-86)||(16311486-16311559)
chr5 (181-226)||(27088415-27088460)
chr5 (108-196)||(35584025-35584112)
chr5 (152-210)||(16366526-16366585)
chr5 (127-198)||(24207614-24207685)
chr5 (175-226)||(38006532-38006583)
chr5 (152-226)||(16311356-16311430)
chr5 (181-226)||(10127062-10127107)
chr5 (185-226)||(12712620-12712661)
chr5 (181-226)||(22694964-22695009)
chr5 (181-221)||(3573205-3573245)
chr5 (181-225)||(4920807-4920851)
chr5 (39-99)||(6809994-6810054)
chr5 (181-213)||(35194065-35194097)
[»] chr4 (30 HSPs)
chr4 (33-215)||(33616189-33616380)
chr4 (33-226)||(42907717-42907918)
chr4 (110-213)||(8843880-8843983)
chr4 (110-213)||(8856844-8856947)
chr4 (108-207)||(36306699-36306798)
chr4 (113-211)||(9929245-9929343)
chr4 (121-215)||(36919050-36919144)
chr4 (50-215)||(37926408-37926580)
chr4 (33-207)||(12075713-12075896)
chr4 (108-213)||(21714051-21714156)
chr4 (113-213)||(53906757-53906855)
chr4 (127-226)||(33516135-33516234)
chr4 (127-225)||(25298897-25298994)
chr4 (127-215)||(37384206-37384293)
chr4 (152-212)||(40420662-40420722)
chr4 (115-226)||(21956877-21956987)
chr4 (133-216)||(50376424-50376507)
chr4 (152-226)||(25941096-25941170)
chr4 (181-226)||(19534442-19534487)
chr4 (113-212)||(3505187-3505286)
chr4 (113-196)||(25265240-25265322)
chr4 (184-226)||(1724373-1724415)
chr4 (57-107)||(9281080-9281130)
chr4 (131-213)||(12505606-12505688)
chr4 (152-206)||(24474524-24474578)
chr4 (50-100)||(25265344-25265394)
chr4 (181-215)||(37349110-37349144)
chr4 (185-226)||(11172960-11173001)
chr4 (181-226)||(47550416-47550461)
chr4 (117-165)||(39086079-39086127)
[»] chr2 (19 HSPs)
chr2 (33-226)||(35248447-35248645)
chr2 (39-215)||(35965165-35965351)
chr2 (113-215)||(25210291-25210393)
chr2 (113-226)||(30696838-30696951)
chr2 (127-215)||(13954673-13954761)
chr2 (127-215)||(14095880-14095968)
chr2 (108-170)||(31600886-31600948)
chr2 (33-209)||(35409234-35409416)
chr2 (46-226)||(34214719-34214907)
chr2 (162-224)||(4961515-4961577)
chr2 (131-213)||(34544386-34544468)
chr2 (33-90)||(4961609-4961666)
chr2 (127-224)||(13531877-13531974)
chr2 (39-99)||(29656934-29656994)
chr2 (139-207)||(37309812-37309880)
chr2 (108-195)||(40734677-40734763)
chr2 (127-215)||(17845464-17845553)
chr2 (185-225)||(4427910-4427950)
chr2 (181-225)||(19104904-19104948)
[»] chr1 (21 HSPs)
chr1 (33-213)||(42729019-42729208)
chr1 (130-225)||(48125746-48125841)
chr1 (52-226)||(16903365-16903550)
chr1 (33-214)||(41477026-41477216)
chr1 (113-226)||(39219172-39219285)
chr1 (16-99)||(14890970-14891053)
chr1 (114-215)||(8880363-8880464)
chr1 (113-212)||(36421680-36421779)
chr1 (46-102)||(13692482-13692538)
chr1 (39-99)||(14902971-14903031)
chr1 (113-208)||(5293490-5293585)
chr1 (184-226)||(12494995-12495037)
chr1 (133-215)||(33293593-33293675)
chr1 (108-213)||(23719512-23719616)
chr1 (181-213)||(29871360-29871392)
chr1 (115-213)||(43513104-43513202)
chr1 (184-226)||(49741069-49741111)
chr1 (181-226)||(9982952-9982997)
chr1 (181-226)||(29936398-29936443)
chr1 (184-225)||(49250836-49250877)
chr1 (181-226)||(51421840-51421885)
[»] chr6 (16 HSPs)
chr6 (33-215)||(9402413-9402604)
chr6 (117-215)||(13768989-13769087)
chr6 (33-215)||(1947864-1948055)
chr6 (41-212)||(34346081-34346270)
chr6 (108-225)||(10925506-10925623)
chr6 (113-215)||(256565-256668)
chr6 (48-99)||(2126819-2126870)
chr6 (13-215)||(8320868-8321079)
chr6 (184-226)||(5863445-5863487)
chr6 (127-209)||(14321794-14321876)
chr6 (183-213)||(29341239-29341269)
chr6 (181-226)||(12141366-12141411)
chr6 (60-101)||(20348916-20348957)
chr6 (181-226)||(24602918-24602963)
chr6 (181-226)||(27738753-27738798)
chr6 (181-226)||(32853825-32853870)
[»] scaffold0244 (1 HSPs)
scaffold0244 (114-195)||(4673-4754)
[»] chr3 (14 HSPs)
chr3 (113-207)||(37032179-37032273)
chr3 (115-226)||(30904877-30904988)
chr3 (113-214)||(3414607-3414708)
chr3 (33-102)||(27252392-27252460)
chr3 (46-102)||(34592993-34593049)
chr3 (48-99)||(40890203-40890254)
chr3 (159-213)||(42243346-42243400)
chr3 (113-158)||(38347525-38347570)
chr3 (181-226)||(39728652-39728697)
chr3 (181-226)||(44172607-44172652)
chr3 (181-226)||(44179307-44179352)
chr3 (181-226)||(49580045-49580090)
chr3 (127-195)||(27937666-27937734)
chr3 (181-225)||(30682802-30682846)
[»] chr7 (16 HSPs)
chr7 (113-226)||(19440072-19440186)
chr7 (129-215)||(29292636-29292722)
chr7 (33-213)||(11472788-11472975)
chr7 (114-226)||(23475325-23475438)
chr7 (108-209)||(36251009-36251110)
chr7 (108-213)||(43550491-43550595)
chr7 (115-215)||(3773989-3774089)
chr7 (113-226)||(23533665-23533780)
chr7 (13-200)||(31345335-31345531)
chr7 (181-215)||(27850399-27850433)
chr7 (48-98)||(37217848-37217898)
chr7 (33-90)||(8265657-8265714)
chr7 (152-212)||(3157040-3157100)
chr7 (181-226)||(3920524-3920569)
chr7 (181-226)||(16866155-16866200)
chr7 (181-226)||(23328596-23328641)
[»] scaffold1322 (1 HSPs)
scaffold1322 (127-209)||(1038-1120)
[»] scaffold0157 (1 HSPs)
scaffold0157 (131-213)||(14789-14871)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 13 - 621
Target Start/End: Complemental strand, 9476288 - 9475686
Alignment:
Q  13 gatgatggcgatcggtagcaatggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgtgacta 112  Q
    |||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9476288 gatgatagcgatcggtagcaatggtgatggagaagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgtgtgtgacta 9476189  T
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9476188 agactctgactgtgtgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggatgggtttgggtat 9476089  T
Q  213 gggctcgaggtgggnnnnnnnnnnnnnnnnccccgttacttgtcccgtatctattgtttgaaatcgggggaaaatccatatccatatccaaatccaatcg 312  Q
    ||| ||||||||||                |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| ||||||    
T  9476088 gggttcgaggtgggtatttatat-------ccccgttacttgtcccgtatccgttttttgaaatcgggggaaaatccatatccatatccaaattcaatcg 9475996  T
Q  313 aaacgnnnnnnntccgtcaaaatgggtttaattcggacggatacccacaaatatagattttgttgtcatgcctagaggtaaaccttgatgccttttgaag 412  Q
    ||||          ||| |||||||||||  |||||||||||||||| || ||||  |||||||||||||||||||||||||||||||||||||||||||    
T  9475995 aaacaagaaaaactcgttaaaatgggtttggttcggacggatacccagaagtatatgttttgttgtcatgcctagaggtaaaccttgatgccttttgaag 9475896  T
Q  413 gcaatgggtaaaagtgaatgggatgtgtgccaaagagctggaaagtgatgaggtccatgtgttcaaactttaaaccacaggaagtgaacaacaattgcat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9475895 gcaatgggtaaaagtgaatgggatgtgtgccaaagagctggaaagtgatgaggtccatgtgttcaaactttaaaccacaagaagtgaacaacaattgcat 9475796  T
Q  513 gtgtacgtggatatagtgtccctaagtgtctttgtcccatcattagtaagattacacaa-ttnnnnnnntggaatccaataatattaattataattgttt 611  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||    
T  9475795 gtgtacgtggatatagtgtctctaagtgtctttgtcccatcattagtaagattacacaatttaaaataatggaatccaataatattaattataattgttt 9475696  T
Q  612 atgcatttac 621  Q
    ||||||||||    
T  9475695 atgcatttac 9475686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 5700168 - 5700382
Alignment:
Q  21 cgatcggtagcaatggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gact 111  Q
    |||||| | |||||||| |||||| |||||||||  || |||||||||| || ||| ||||||||||||| |||||||||||  |||         ||||    
T  5700168 cgatcgatggcaatggtgatggagaagagagaggcagatagtgtgagatatgaaaggagataagagagaattatgataagtgactgtcatctaaaagact 5700267  T
Q  112 aagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggta 211  Q
    |||||||||||| |  ||||||||| ||||||||||||  |||| ||||||||| ||||||||| || |||||||| ||||||||||| || ||||||||    
T  5700268 aagactctgactatgggagtgaaatgatttagagtttcggtttcaatttatataaaaggggtaaaaaattaattttatacattcgggatggatttgggta 5700367  T
Q  212 tgggctcgaggtggg 226  Q
    |||| ||||||||||    
T  5700368 tgggttcgaggtggg 5700382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 28345315 - 28345517
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg-----catgtga----ctaagactctgact 123  Q
    ||||| |||||| ||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||     ||| |||    || ||||| |||||    
T  28345315 atggtgatggagaagagagaggtcaaaagtgtgagatatggaaggagataagagagaactatgataagtgagtgtcatctgaaatactgagactatgact 28345414  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggt 223  Q
    || |||||||||| ||||||| ||||  |||||||||||||| |||||||||||  || ||||||||||||| ||||  ||||||||||||| ||| |||    
T  28345415 gtgtgagtgaaatgatttagaatttcggtttctatttatataaaaggggtaatatatttattttctacattcaggacaagtttgggtatgggttcggggt 28345514  T
Q  224 ggg 226  Q
    |||    
T  28345515 ggg 28345517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 29918520 - 29918621
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||||| ||||| |||||||||| |||||| |||| | |||||||||||||| ||| |||||||| || ||||| |||||| |||||||||||| ||||    
T  29918520 agactctaactgtgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatttgggacgggtttgtgtat 29918619  T
Q  213 gg 214  Q
    ||    
T  29918620 gg 29918621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 8545598 - 8545411
Alignment:
Q  48 agagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgactgtttgagtgaaataa 138  Q
    |||||||| |||| |||||||| |||||| ||| ||||||||| |||||||||||  |||         |||  |||||||| || |||||||||||| |    
T  8545598 agagaggttgagaatgtgagatatggaaggagaaaagagagaattatgataagtgagtgtcatttgaaagaccgagactctggctatttgagtgaaatga 8545499  T
Q  139 tttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||| ||||  |||||| |||||||| |||| ||  ||| || |||||||||||| |||||| ||||| ||||||| ||| ||||||    
T  8545498 tttagggtttggatttctgtttatataaaaggagttgtaaattgattttctacatttgggacgagtttgagtatgggttcggggtggg 8545411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 30903965 - 30904061
Alignment:
Q  119 tgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    ||||||| |||||||||| |||||  ||||   |||||||||||||| || | ||||||| || |||||||||||||||||| | ||||||||||||    
T  30903965 tgactgtgtgagtgaaatgatttaaggttttggtttctatttatataaaatgtgtaataaattgattttctacattcgggactgatttgggtatggg 30904061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 12468393 - 12468309
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgg 197  Q
    |||||||||| || |||||||||||||||||  |||   ||||| |||||||| || ||||||||| || |||||||||||||||    
T  12468393 agactctgacagtatgagtgaaataatttaggatttgcgtttctctttatataaaaagggtaataagttgattttctacattcgg 12468309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 6388680 - 6388586
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    ||||||| | ||| |||||||||| |||||| ||||   ||||| |||||||| || ||||||||| || ||||||||||||| ||| |||||||    
T  6388680 agactctaattgtgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttctacattcaggatgggtttg 6388586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 17108303 - 17108388
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    |||||||||| |||||| |||| | |||||||||||||| || || |||||| || ||||| |||| |||||| | ||||||||||    
T  17108303 tgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgattttttacaatcgggatgagtttgggtat 17108388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 14186295 - 14186335
Alignment:
Q  175 ataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  14186295 ataaattaattttctacattcaggacgggtttgggtatggg 14186335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 36274956 - 36275066
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||| ||||||| |||||||||| |||||| |||    |||||||||||||| ||||| || ||| || ||||| ||||||||||||  |||| |||||    
T  36274956 agactttgactgtgtgagtgaaatgatttagggttggg-tttctatttatataaaagggatagtaaattgattttttacattcgggacatgtttaggtat 36275054  T
Q  213 gggctcgaggtg 224  Q
    ||| ||| ||||    
T  36275055 gggttcggggtg 36275066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 14155491 - 14155545
Alignment:
Q  159 ttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
    ||||||| |||||||||||| || ||||||||||||  ||| |||||||||||||    
T  14155491 ttatataaaaggggtaataaattgattttctacatttaggatgggtttgggtatg 14155545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 17084354 - 17084304
Alignment:
Q  52 aggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg 102  Q
    ||||||||||||||| || |||||| ||| |||||| ||||||||||||||    
T  17084354 aggtcgagagtgtgaaatatggaaggagaaaagagataactatgataagtg 17084304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 30481529 - 30481483
Alignment:
Q  180 ttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||| ||||||||||||| ||||||||||||| ||| ||||||    
T  30481529 ttaattttttacattcgggacgagtttgggtatgggttcggggtggg 30481483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 24870131 - 24870086
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| ||||||||||| |||||||||||| ||||||    
T  24870131 taattttttacatttgggacgggtttaggtatgggctcggggtggg 24870086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 8031124 - 8031164
Alignment:
Q  186 ttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||||||||  ||||||||||||||| ||||||||||    
T  8031124 ttctacattcgggtagggtttgggtatgggttcgaggtggg 8031164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 17153001 - 17153184
Alignment:
Q  41 ggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgactgtttgagt 131  Q
    |||| ||||||||| |||||||||||||| |||||| ||| || |||||||||||||||||| || |         |||| ||  ||||||||| |||||    
T  17153001 ggagaagagagagggcgagagtgtgagatatggaagaagaaaatagagaactatgataagtgaatctcatttgaaagactgagtatctgactgtgtgagt 17153100  T
Q  132 gaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    ||||| ||||||  |||  |||||||||||| || |||||||||||| || |||||||||||||||||||||||||||||||||    
T  17153101 gaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttctacattcgggacgggtttgggtatggg 17153184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 12457425 - 12457530
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    |||||||||  ||| ||| |||||||||| ||||||| |||   |||||||||||||  |||||||||||| || |||||||||||||||||||||||||    
T  12457425 gactaagaccatgattgtgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttctacattcgggacgggtttg 12457524  T
Q  208 ggtatg 213  Q
    ||||||    
T  12457525 ggtatg 12457530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 40187921 - 40187732
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| |||||| ||||||||  |||||||||||||| |||||  |||||||||||||||||||||||||  |||         || | | |||||||||    
T  40187921 atggtgatggagaagagagagaccgagagtgtgagatatggaatgagataagagagaactatgataagtgagtgtcatctgaaagattgaaactctgact 40187822  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
     | ||||| |||| ||||||  |||  ||| ||||||||||| ||| |||||||| ||||||||||| |||||||||| |||||||||||    
T  40187821 atgtgagtaaaatgatttaggattttcattactatttatataaaagaggtaataaattaattttctatattcgggacgagtttgggtatg 40187732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 33 - 225
Target Start/End: Complemental strand, 7350672 - 7350471
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| |||||| |||||| |||||||| |||||||| |||||| |||||||||||||||||||||||||   ||         || |  |||||| |||    
T  7350672 atggtgatggagaagagaggggtcgagaatgtgagatatggaaggagataagagagaactatgataagtgagcgtcgtctcaaagattgcgactctaact 7350573  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggt 223  Q
     | ||||| |||| |||||| ||||| ||| ||||||||||| ||| | |||||| ||||||||||||||| | |||||||||  ||||||| ||| |||    
T  7350572 atgtgagtaaaatgatttagggtttcgattactatttatataaaagcgataataaattaattttctacatttgagacgggtttaagtatgggttcggggt 7350473  T
Q  224 gg 225  Q
    ||    
T  7350472 gg 7350471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 226
Target Start/End: Original strand, 29664902 - 29664997
Alignment:
Q  131 tgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||| ||||||||||| | |||||||||| ||| |||||||| ||| || ||||| ||||||||||||||||||||||||| | |||| |||||    
T  29664902 tgaaatgatttagagtttgagtttctatttaaataaaaggggtagtaaattgattttgtacattcgggacgggtttgggtatgagttcgaagtggg 29664997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 27900573 - 27900464
Alignment:
Q  117 tctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggc 216  Q
    ||||| ||| ||| |||||| |||||| |||||| |||||||||||||| ||| || ||||| || ||||| |||||||||| ||| ||||||||||||     
T  27900573 tctgaatgtgtgactgaaatgatttagggtttcagtttctatttatataaaagaggaaataaattgattttatacattcggggcggatttgggtatgggt 27900474  T
Q  217 tcgaggtggg 226  Q
    ||||| ||||    
T  27900473 tcgagatggg 27900464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 8020523 - 8020628
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    |||| |||||||||||||||||||| |||||||||| ||||   |||   |||||||| |||||||| ||| || ||||||||||||| | |||||||||    
T  8020523 gactgagactctgactgtttgagtggaataatttagggtttaggttttcctttatataaaaggggtagtaaattgattttctacattcagaacgggtttg 8020622  T
Q  208 ggtatg 213  Q
     |||||    
T  8020623 cgtatg 8020628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 32575071 - 32575012
Alignment:
Q  156 tatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    |||||||||| |||||||||||| || || ||||||||||||| ||||||||||| ||||    
T  32575071 tatttatataaaaggggtaataaattgatattctacattcggggcgggtttgggtttggg 32575012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 38972746 - 38972948
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| |||||| ||||||||   |||||||||| || || ||| |||||||||||||||||||||||||  |||         || | ||||||| ||     
T  38972746 atggtaatggagaagagagagacagagagtgtgatatatgaaaggagataagagagaactatgataagtgagtgtcatatgaaagatttagactctaaca 38972845  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggt 223  Q
    || ||| | |||| |||||| |||||| |||| ||||||||| ||||| |||||| || ||||| | |||| | || ||||||| ||||||| ||| |||    
T  38972846 gtgtgaatcaaatgatttagggtttcagtttcgatttatataaaagggttaataaattgattttatgcatttgagatgggtttgagtatgggttcggggt 38972945  T
Q  224 ggg 226  Q
    |||    
T  38972946 ggg 38972948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 6810085 - 6810182
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtg 224  Q
    |||||||||| |||||  ||||   |||||||| ||||| |||||| ||||| || ||||||  ||||||||| ||||||||||||||| ||| ||||    
T  6810085 tgagtgaaatcatttaaggtttgggtttctattgatataaaaggggcaataaattgattttcaccattcgggatgggtttgggtatgggttcggggtg 6810182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 16311559 - 16311486
Alignment:
Q  13 gatgatggcgatcggtagcaatggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagag 86  Q
    ||||||| |||||| | || ||||| |||||| ||||||||||||||| |||||||| |||||| ||| |||||    
T  16311559 gatgatgacgatcgatggctatggtgatggagaagagagaggtcgagattgtgagatatggaaggagaaaagag 16311486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 27088460 - 27088415
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||    
T  27088460 taattttctacattcgagacgggtttgggtatgggttcggggtggg 27088415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 35584025 - 35584112
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcg 196  Q
    |||| ||||||||||||| ||||  |||| |||||| |||| | |||||||||||||| || ||||||||| || ||||| ||||||||    
T  35584025 gactgagactctgactgtgtgagcaaaatgatttagggtttgagtttctatttatata-aaagggtaataaattgattttgtacattcg 35584112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 16366585 - 16366526
Alignment:
Q  152 tttctatttatatataaggg-gtaataatttaattttctacattcgggacgggtttgggt 210  Q
    ||||| |||||||| ||||| |||||||  ||||||||||||||||||||| ||||||||    
T  16366585 tttctttttatataaaagggagtaataaaataattttctacattcgggacgagtttgggt 16366526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 24207614 - 24207685
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcggg 198  Q
    |||||||| | |||||| |||| | ||| |||||||||| ||||  |||||| |||||||||||||||||||    
T  24207614 tgagtgaagttatttagggttttagtttttatttatataaaaggattaataaattaattttctacattcggg 24207685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 38006583 - 38006532
Alignment:
Q  175 ataatttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||| ||||||||| ||||||||||||| |||||||||||| ||| ||||||    
T  38006583 ataaattaattttcaacattcgggacggatttgggtatgggttcggggtggg 38006532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 16311430 - 16311356
Alignment:
Q  152 tttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||||||||| ||||| |||||| || |||||| ||||||| ||| ||||||  |||||| ||| ||||||    
T  16311430 tttctatttatataaaagggataataaattgattttcaacattcgagacaggtttgaatatgggttcggggtggg 16311356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 10127062 - 10127107
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  10127062 taattttttacatttgggacgggtttgggtatgggttcggggtggg 10127107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 12712661 - 12712620
Alignment:
Q  185 tttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||||||||||  ||||||||||||||| ||||||||||    
T  12712661 tttctacattcgggtagggtttgggtatgggttcgaggtggg 12712620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 22695009 - 22694964
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  22695009 taattttttacatttgggacgggtttgggtatgggttcggggtggg 22694964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 3573205 - 3573245
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgag 221  Q
    ||||||||||||||||||| ||||||| ||||||| |||||    
T  3573205 taattttctacattcgggaggggtttgagtatgggttcgag 3573245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 4920807 - 4920851
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtgg 225  Q
    ||||||| |||||| |||||||||||||||||||| ||| |||||    
T  4920807 taattttttacatttgggacgggtttgggtatgggttcggggtgg 4920851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 6809994 - 6810054
Alignment:
Q  39 atggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataa 99  Q
    |||||| ||||||||| ||| | |||||||  |||||| ||| ||||||||||||||||||    
T  6809994 atggagaagagagaggccgaaattgtgagacatggaaggagaaaagagagaactatgataa 6810054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 35194097 - 35194065
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatg 213  Q
    ||||||||||||||||||||||||||| |||||    
T  35194097 taattttctacattcgggacgggtttgagtatg 35194065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 33616380 - 33616189
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg-----catgtgac----taagactctgact 123  Q
    |||||||| ||| ||||| ||| |||||||||||||| |||| | ||| |||||||||||||||||||||     ||| |||     |||||||||||||    
T  33616380 atggttatagagtagagaaaggccgagagtgtgagatatggatggagaaaagagagaactatgataagtgagtgtcatatgaaatattaagactctgact 33616281  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    || |||||||||| |||||| ||||  |||| |||||||||| |||||||||||| || ||||||||||||| || | ||||| ||||||||    
T  33616280 gtgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttctacattcagggcaggttttggtatggg 33616189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 42907717 - 42907918
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| || ||| ||| ||||| | |||||||||||| |||||| ||| |||| ||||||||||||||||  |||         |||||||||||| |||    
T  42907717 atggtgattgagaagaaagaggccaagagtgtgagatatggaaggagaaaagatagaactatgataagtgtgtgtcatctgaaagactaagactctaact 42907816  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggt 223  Q
    || |||||||||| |||||| |||| | |||||||||||||| ||| | || ||| || ||||||||||||||||||| ||||||||||||||||| |||    
T  42907817 gtatgagtgaaatgatttagggtttgagtttctatttatataaaagag-tagtaaattgattttctacattcgggacgagtttgggtatgggctcggggt 42907915  T
Q  224 ggg 226  Q
    |||    
T  42907916 ggg 42907918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 8843983 - 8843880
Alignment:
Q  110 ctaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttggg 209  Q
    |||||||| ||||||| |||||||||| ||||||  ||| | |||||||||||||  |||||||||||| ||||||||||||||||  ||||||||||||    
T  8843983 ctaagactgtgactgtgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattcacgacgggtttggg 8843884  T
Q  210 tatg 213  Q
    ||||    
T  8843883 tatg 8843880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 8856947 - 8856844
Alignment:
Q  110 ctaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttggg 209  Q
    |||||||| ||||||| |||||||||| ||||||  ||| | |||||||||||||  |||||||||||| ||||||||||||||||  ||||||||||||    
T  8856947 ctaagactgtgactgtgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattcacgacgggtttggg 8856848  T
Q  210 tatg 213  Q
    ||||    
T  8856847 tatg 8856844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 36306699 - 36306798
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    |||| ||||||| | ||| | |||||||| |||||   |||| ||||||||||||||| |||||||||||| || |||||||||||||||||||||||||    
T  36306699 gactgagactctaattgtgtaagtgaaatgatttatgatttcgatttctatttatataaaaggggtaataaattgattttctacattcgggacgggtttg 36306798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 9929343 - 9929245
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggta 211  Q
    ||||||||||||| |||||||||| ||||||||||||| ||| |||||||||  ||| |||||||| || ||||||||| ||| |||||  ||||||||    
T  9929343 agactctgactgtgtgagtgaaattatttagagtttcagtttatatttatatggaagaggtaataaattgattttctactttcaggacgattttgggta 9929245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 36919050 - 36919144
Alignment:
Q  121 actgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    ||||| |||||||||| ||||||||||| | |||||||||||||| ||| ||||||||  | ||||||||||| ||| ||| |||||||||||||    
T  36919050 actgtgtgagtgaaatgatttagagtttgagtttctatttatataaaagtggtaataaactgattttctacatccggaacgagtttgggtatggg 36919144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 37926408 - 37926580
Alignment:
Q  50 agaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt-------gactaagactctgactgtttgagtgaaataattta 142  Q
    |||||||||||||||||||| |||||| ||| || ||||||||||||||||||  |||       |||| ||||| | ||||| ||||| |||| |||||    
T  37926408 agaggtcgagagtgtgagatatggaaggagaaaatagagaactatgataagtgactgtcatcaaagactgagactttaactgtgtgagttaaatgattta 37926507  T
Q  143 gagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
     ||||| | |||| ||| ||||  ||||| |||||| ||||||| |||||||| ||| | |||||||||||||    
T  37926508 aagtttgagtttcaattgatatgaaagggataataaattaatttactacattcaggatgagtttgggtatggg 37926580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 12075896 - 12075713
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgtga---------ctaagactctgact 123  Q
    ||||| |||||| ||| ||||  |||||||||||||| | |||| ||| ||||||||||||| ||||||| |||| |         || | ||||| |||    
T  12075896 atggtgatggagaagacagagaccgagagtgtgagatatagaaggagaaaagagagaactataataagtggatgtcatctaaaaaactgaaactctaact 12075797  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    || || ||||||| ||| ||||||| | |||||||||||||| || ||||||||| || ||||||||||||| ||||| |||||    
T  12075796 gtgtgggtgaaatgattcagagttttagtttctatttatataaaatgggtaataaattgattttctacattccggacgagtttg 12075713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 21714156 - 21714051
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    |||| ||||||| | ||| | |||||||| |||||| |||| | |||||||||||||| ||| |||||||| ||||||||||||||| | |||| ||||     
T  21714156 gactgagactctaattgtgtaagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttgagacgagttta 21714057  T
Q  208 ggtatg 213  Q
    ||||||    
T  21714056 ggtatg 21714051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 53906855 - 53906757
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||| ||||| | |||||||||||| |||  ||||| ||||||||||||||| ||||||||||| || |  |||||||||| ||||||||||| |||||    
T  53906855 agactttgactatgtgagtgaaataacttaaggtttcgatttctatttatataaaaggggtaatatttga--tttctacatttgggacgggtttaggtat 53906758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 33516234 - 33516135
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||||| |||||| |||| | ||| |||||||||| |||||||||||  || ||||| |||||| | ||||||||||||||| || ||| ||||||    
T  33516234 tgagtgaaatgatttagggtttgagtttttatttatataaaaggggtaatacattgattttttacatttgagacgggtttgggtataggttcggggtggg 33516135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 25298994 - 25298897
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtgg 225  Q
    |||||||||| ||||||||||| | || ||||||||| | ||||||| |||| || |||||| ||||| || ||||||||||||||||| ||| |||||    
T  25298994 tgagtgaaatgatttagagtttgagtt-ctatttataaaaaaggggtgataaattgattttcaacatttggtacgggtttgggtatgggttcggggtgg 25298897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 37384206 - 37384293
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    |||||||||| |||||| |||| || ||||||||||||| ||||| |||||| || | |||||| ||| |||||||||||| |||||||    
T  37384206 tgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattga-tttctatatttgggacgggtttgtgtatggg 37384293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 40420722 - 40420662
Alignment:
Q  152 tttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    |||||||||||||| ||||||||||||  | ||||||||||||||||  ||||||||||||    
T  40420722 tttctatttatataaaaggggtaataaagtgattttctacattcggggtgggtttgggtat 40420662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 21956987 - 21956877
Alignment:
Q  115 actctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgg 214  Q
    |||||||||||  || |||||| |||||| ||||   ||| |||||||||| ||||| |||||| || ||||||||||||||  ||| ||||||||||||    
T  21956987 actctgactgtgcgaatgaaatgatttagggtttgggtttttatttatataaaaggg-taataaattgattttctacattcgtaacgagtttgggtatgg 21956889  T
Q  215 gctcgaggtggg 226  Q
    | ||| ||||||    
T  21956888 gttcggggtggg 21956877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 50376507 - 50376424
Alignment:
Q  133 aaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggc 216  Q
    ||||||||||| |||| | |||||||||||||| || ||  ||||| || ||||||||||||||| ||||||| |||| |||||    
T  50376507 aaataatttagcgttttagtttctatttatataaaatggaaaataaattgattttctacattcggaacgggttcgggtgtgggc 50376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 25941096 - 25941170
Alignment:
Q  152 tttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||||||||| ||||||| |||| || ||||||||||| || |||  ||||||||||||| ||| ||||||    
T  25941096 tttctatttatataaaaggggttataaattgattttctacatccgagacatgtttgggtatgggttcggggtggg 25941170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 19534442 - 19534487
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||    
T  19534442 taattttctacattcgtgacgggtttgggtatgagttcgaggtggg 19534487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 3505187 - 3505286
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||||| || || ||| |||||| || |||||||| |||||||||||| ||| |||| ||||||| || |||||||| || ||| || |||||| ||||    
T  3505187 agactctaacggtgtgaatgaaatgatctagagtttgaatttctatttagataaaaggagtaataaattgattttctatatgcggaacaggtttgtgtat 3505286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 196
Target Start/End: Complemental strand, 25265322 - 25265240
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcg 196  Q
    ||||||||| ||| ||||| |||| ||||||| ||| | |||||||||||||| || || |||||| || ||||||||||||||    
T  25265322 agactctgattgtgtgagtaaaatgatttagaatttgagtttctatttatatagaa-ggataataaattgattttctacattcg 25265240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 1724415 - 1724373
Alignment:
Q  184 ttttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||    
T  1724415 ttttctgcattcgggacgggtttgggtatgggttcggggtggg 1724373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 9281130 - 9281080
Alignment:
Q  57 gagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt 107  Q
    ||||||||||||| |||||| ||| ||||||| ||||||||||||| ||||    
T  9281130 gagagtgtgagatatggaaggagaaaagagagtactatgataagtgaatgt 9281080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 12505688 - 12505606
Alignment:
Q  131 tgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
    |||||| |||||  |||| | |||||||||||||| |||||| ||||| || || || ||| ||| |||||||||||||||||    
T  12505688 tgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaattgatgttttaccttcaggacgggtttgggtatg 12505606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 24474578 - 24474524
Alignment:
Q  152 tttctatttatatataaggggtaataatttaattttctacattcgggacgggttt 206  Q
    |||||||||||||| ||||| ||| ||||| ||||| ||||||||||||| ||||    
T  24474578 tttctatttatataaaagggataaaaatttgattttttacattcgggacgagttt 24474524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 25265394 - 25265344
Alignment:
Q  50 agaggtcgagagtgtgagatgtggaagtagataagagagaactatgataag 100  Q
    ||||| ||| |||||||||| |||||| ||| |||||||||||||||||||    
T  25265394 agaggccgaaagtgtgagatatggaaggagaaaagagagaactatgataag 25265344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 37349110 - 37349144
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatggg 215  Q
    ||||||||| |||||||||||||||||||||||||    
T  37349110 taattttctgcattcgggacgggtttgggtatggg 37349144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 11172960 - 11173001
Alignment:
Q  185 tttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||    
T  11172960 tttctacattcgggaagggtttgggtatgggttcggggtggg 11173001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 47550461 - 47550416
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  47550461 taattttttacatttgggacgggtttgggtatgggttcggggtggg 47550416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 39086079 - 39086127
Alignment:
Q  117 tctgactgtttgagtgaaataatttagagtttcaatttctatttatata 165  Q
    ||||||||| |||||||||| |||||| |||| | ||||||||||||||    
T  39086079 tctgactgtgtgagtgaaatgatttagggtttaagtttctatttatata 39086127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 35248645 - 35248447
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| |||||| ||||||||| | | |||||||||| |||||| ||||||||||||||||| ||||| |  |||         |||| |||||||| ||    
T  35248645 atggtgatggagaagagagaggccaaaagtgtgagatatggaaggagataagagagaactataataagcgagtgtcatttgaaagactgagactctgtct 35248546  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggt 223  Q
    || |||||||||| |||||| |||||| |||||||||||||| ||||||||    | || |||||||||||| ||||||||||||||||||| ||| |||    
T  35248545 gtgtgagtgaaatgatttagggtttcattttctatttatataaaaggggta----tatatttttctacattcaggacgggtttgggtatgggttcggggt 35248450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 35965165 - 35965351
Alignment:
Q  39 atggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgtga---------ctaagactctgactgtttga 129  Q
    |||||| ||||||| | |||||||||||||| |||||| |||||| |||||||||||||||||| |||| |         || |||  || ||||| |||    
T  35965165 atggagaagagagatgacgagagtgtgagatatggaaggagataaaagagaactatgataagtgaatgttatctgaaaaactgagatcctcactgtatga 35965264  T
Q  130 gtgaaataatttagagtttcaatttctattta-tatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    ||||||| |||||  | ||||||| ||||||| |||| |||||| ||||| || |||||||||||||||||||||||||||||||||    
T  35965265 gtgaaatgatttatggattcaattcctatttagtataaaaggggcaataaattgattttctacattcgggacgggtttgggtatggg 35965351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 25210291 - 25210393
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    |||||| |||||| |||||||||| |||||| |||| | |||||||||||||| || |||||| || || ||||||||||||||||| |||||| |||||    
T  25210291 agactccgactgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatgggtaacaaattgattttctacattcgggaggggttttggtat 25210390  T
Q  213 ggg 215  Q
    |||    
T  25210391 ggg 25210393  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 30696838 - 30696951
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||||| ||||| ||||||| || |||||| |||| |||||||||||||||| || ||||||||| || ||||| |||||| ||||  |||||||||||    
T  30696838 agactctaactgtgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattttttacatttgggataggtttgggtat 30696937  T
Q  213 gggctcgaggtggg 226  Q
    | | ||| ||||||    
T  30696938 gagttcggggtggg 30696951  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 13954673 - 13954761
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    |||||||||| |||||| |||  | |||||||||||||| ||| |||||||| || ||||||||| |||| |||||||||| |||||||    
T  13954673 tgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttctacgttcgagacgggtttgagtatggg 13954761  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 14095880 - 14095968
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    |||||||||| |||||| |||  | |||||||||||||| ||| |||||||| || ||||||||| |||| |||||||||| |||||||    
T  14095880 tgagtgaaatgatttagggttcgagtttctatttatataaaagtggtaataagttgattttctacgttcgagacgggtttgagtatggg 14095968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 31600948 - 31600886
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataagg 170  Q
    |||||||||||| ||||| |||||||||| ||||||||||| | |||||||||||||| ||||    
T  31600948 gactaagactctaactgtatgagtgaaatgatttagagtttgagtttctatttatataaaagg 31600886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 35409416 - 35409234
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| |||||| ||||||||| |||||||||||||| |||| | ||| ||||  |||||||||||||||  |||         |||| |||||||||||    
T  35409416 atggtgatggagaagagagaggccgagagtgtgagatatggacgaagaaaagaatgaactatgataagtgagtgtcatatgtaagactgagactctgact 35409317  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttggg 209  Q
    || | ||||||||| ||||||||||   ||| ||||  ||||||| |||||| || || ||||| ||||||| |||||||||||||    
T  35409316 gtgtaagtgaaatagtttagagtttgggtttttatt--tatataacgggtaaaaaattgattttatacattc-ggacgggtttggg 35409234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 34214907 - 34214719
Alignment:
Q  46 agagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg-----catgtga----ctaagactctgactgtttgagtgaaat 136  Q
    ||||||||| ||| |||||||||| | |||| ||| ||||| |||||||||||||||     |||||||    || ||||||||||||| | ||||||||    
T  34214907 agagagaggccgaaagtgtgagatatcgaaggagaaaagagcgaactatgataagtgagtgtcatgtgaaagactgagactctgactgtgttagtgaaat 34214808  T
Q  137 aatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
     |||||||| || | |||||||||||||| |  ||| ||||| || | |||||||||   ||||||||||| ||||| | |||| |||||    
T  34214807 gatttagag-ttgagtttctatttatataaacagggcaataaattgactttctacatctaggacgggtttgagtatgagttcgaagtggg 34214719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 4961577 - 4961515
Alignment:
Q  162 tatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtg 224  Q
    |||| ||| |||||||| || |||||||| |||||||||| ||||||||||||| ||||||||    
T  4961577 tataaaagaggtaataaattcattttctatattcgggacgagtttgggtatgggttcgaggtg 4961515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 34544468 - 34544386
Alignment:
Q  131 tgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
    |||||| |||||| |||| | ||| |||||||||| || ||||||||| |  ||||||||||||||||| ||||||| |||||    
T  34544468 tgaaattatttagggtttgagtttttatttatataaaatgggtaataaatagattttctacattcgggaggggtttgagtatg 34544386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 4961666 - 4961609
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaa 90  Q
    ||||| |||||| |||||||| ||||||||||||||| |||||| ||| |||||||||    
T  4961666 atggtgatggagaagagagagatcgagagtgtgagatatggaaggagaaaagagagaa 4961609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 13531877 - 13531974
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtg 224  Q
    |||||||||| |||||| |||| | |||||||||||||| || || |||||| || |||||||||||  ||| |||||||| || |||| ||| ||||    
T  13531877 tgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacatgtggggcgggtttgagtgtgggttcggggtg 13531974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 29656994 - 29656934
Alignment:
Q  39 atggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataa 99  Q
    |||||| ||||||||| ||||| |||||||| || ||| ||||||||||||| ||||||||    
T  29656994 atggagaagagagaggccgagaatgtgagatatgtaaggagataagagagaattatgataa 29656934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 37309880 - 37309812
Alignment:
Q  139 tttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    ||||| |||| ||||||||||||| || ||||| | |||| || ||||||||| |||||||||||||||    
T  37309880 tttagggtttgaatttctatttatgtaaaagggatgataaattgattttctaccttcgggacgggtttg 37309812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 40734763 - 40734677
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattc 195  Q
    |||| ||||||||||||| |||||||||| |||||| ||||   ||| ||||||||| |||| |||| ||| |||||||||| |||||    
T  40734763 gactgagactctgactgtgtgagtgaaatgatttagggttttggtttttatttatat-taagaggtagtaaattaattttctgcattc 40734677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 17845553 - 17845464
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttct-acattcgggacgggtttgggtatggg 215  Q
    |||||||||| ||||||  ||  | |||||||||||||| || || |||||| || ||||| | ||||||| ||||||||||||||||||    
T  17845553 tgagtgaaatgatttaggtttggagtttctatttatataaaaaggataataaattgatttttttacattcgagacgggtttgggtatggg 17845464  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 4427910 - 4427950
Alignment:
Q  185 tttctacattcgggacgggtttgggtatgggctcgaggtgg 225  Q
    ||||||||||||||  ||||||||||||||| |||||||||    
T  4427910 tttctacattcgggtagggtttgggtatgggttcgaggtgg 4427950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 19104948 - 19104904
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtgg 225  Q
    ||||||||| ||||||||||||||||| ||||||  |||||||||    
T  19104948 taattttctgcattcgggacgggtttgagtatggattcgaggtgg 19104904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 42729208 - 42729019
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| |||||| ||||||||  ||||||||||| || |||||| ||| |||||||||||||||||||||  |||         |||| |||||||||||    
T  42729208 atggtgatggagaagagagagaccgagagtgtgatatatggaaggagacaagagagaactatgataagtgggtgttatctgaaagactgagactctgact 42729109  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
    || |||||||||| |||||| || | | |||||||||||||| ||||| | |||| || ||||||||||||| | ||| |||||||||||    
T  42729108 gtgtgagtgaaatgatttagtgtataagtttctatttatataaaagggatgataaatttattttctacattcagaacgtgtttgggtatg 42729019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 48125841 - 48125746
Alignment:
Q  130 gtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgggctcgaggtgg 225  Q
    ||||||||||||||||||| | |||||||||||||| ||| |||| ||| || |||||||||||||| |||| ||||||||||||| ||| |||||    
T  48125841 gtgaaataatttagagtttgagtttctatttatataaaagcggtagtaaattgattttctacattcgcgacgagtttgggtatgggttcggggtgg 48125746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 16903365 - 16903550
Alignment:
Q  52 aggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---gactaagactctgactgtttgagtgaaataatttagagttt 148  Q
    ||||||||||||||| || |||||| ||| |||||||||||||||||||||  |||   |||| | ||||||| ||| ||||||||||||||||| ||||    
T  16903365 aggtcgagagtgtgaaatatggaaggagaaaagagagaactatgataagtgattgtcaagactgaaactctgattgtgtgagtgaaataatttagggttt 16903464  T
Q  149 caatttctatttatatataaggggtaataa--------tttaattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
     | ||| |||||||||| || ||| |||||        |||  |||| ||||||||||||||||||||||||| | ||| ||||||    
T  16903465 gagtttatatttatataaaaagggcaataaattgattttttttttttttacattcgggacgggtttgggtatgagttcggggtggg 16903550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 41477216 - 41477026
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| |||||| ||||||||| ||||||||||| || || |||  ||||| |||||| |||||||||||  |||         |||  ||||| |||||    
T  41477216 atggtaatggagaagagagaggccgagagtgtgaaatatgaaaggggataaaagagaattatgataagtgggtgtcatctgaaagacggagactttgact 41477117  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgg 214  Q
    || ||| ||||||||||||| ||||| |||||| |||||||| || |||||| || || ||||||| | ||||||||||||||||||||||    
T  41477116 gtgtgaatgaaataatttagggtttccatttctctttatataaaaagggtaacaaattgattttctgctttcgggacgggtttgggtatgg 41477026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 39219172 - 39219285
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||| ||||||| |||| ||||| |||||| |||| | |||||||||||||| ||| |||||||| |||||||||||||||  | ||| ||||||||||    
T  39219172 agactgtgactgtgtgagcgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattaattttctacatttagaacgagtttgggtat 39219271  T
Q  213 gggctcgaggtggg 226  Q
    ||| ||| ||||||    
T  39219272 gggttcggggtggg 39219285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 14890970 - 14891053
Alignment:
Q  16 gatggcgatcggtagcaatggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataa 99  Q
    |||| |||||| |||| ||||| |||||| ||||||||||||||| |||||||| |||||| ||| ||||||||||||| ||||    
T  14890970 gatgccgatcgatagctatggtgatggagaagagagaggtcgagattgtgagatatggaaggagaaaagagagaactattataa 14891053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 8880363 - 8880464
Alignment:
Q  114 gactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
    |||||| ||| | |||||||||| ||||| ||||| | |||||||||||| | |||||||||||| || |||||   |||| ||||||||||||||||||    
T  8880363 gactctaactttgtgagtgaaatgatttaaagtttgagtttctatttataaaaaaggggtaataaatttatttttagcatttgggacgggtttgggtatg 8880462  T
Q  214 gg 215  Q
    ||    
T  8880463 gg 8880464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 36421680 - 36421779
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||||||||||| ||| |||||| ||||||||||  | ||| ||||||||||  |||| |||||| || |||||||| ||||| |||| ||||||||||    
T  36421680 agactctgactgtgtgaatgaaatgatttagagttcgagtttttatttatataagagggataataaattgattttctatattcgagacgagtttgggtat 36421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 13692482 - 13692538
Alignment:
Q  46 agagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg 102  Q
    ||||||||| |||||||||||||| |||||| ||| ||||||||||||| |||||||    
T  13692482 agagagaggccgagagtgtgagatatggaaggagaaaagagagaactataataagtg 13692538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 14902971 - 14903031
Alignment:
Q  39 atggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataa 99  Q
    |||||| ||||||||| ||||| |||||||| |||||| ||| ||||||||||||||||||    
T  14902971 atggagaagagagaggccgagattgtgagatatggaaggagaaaagagagaactatgataa 14903031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 5293585 - 5293490
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgg 208  Q
    |||||||| |||| ||| ||||||| ||| |||||| | |||||||||||||| ||| | |||||| || | |||| |||||||||||| ||||||    
T  5293585 agactctggctgtgtgattgaaatagttttgagtttgagtttctatttatataaaagtgataataaattgactttcaacattcgggacgagtttgg 5293490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 12494995 - 12495037
Alignment:
Q  184 ttttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  12494995 ttttctacatttgggacgggtttgggtatgggttcgaggtggg 12495037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 33293675 - 33293593
Alignment:
Q  133 aaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    |||| |||||| |||| | |||||||| ||||| || ||||| ||| || ||||||||||||||| ||| |||||||||||||    
T  33293675 aaatgatttagggtttgagtttctattgatataaaatgggtactaaattgattttctacattcggaacgagtttgggtatggg 33293593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 23719512 - 23719616
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    |||| |||||| |||||| | |||||||| ||||| ||||| | |||||||||||||| || ||||| ||| || | ||| ||||||||||||| |||||    
T  23719512 gactgagactcagactgtgttagtgaaatgatttatagtttgagtttctatttatataaaaagggtagtaaattga-tttgtacattcgggacgagtttg 23719610  T
Q  208 ggtatg 213  Q
     |||||    
T  23719611 agtatg 23719616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 29871392 - 29871360
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatg 213  Q
    |||||||||||||||||||||||||||||||||    
T  29871392 taattttctacattcgggacgggtttgggtatg 29871360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 43513202 - 43513104
Alignment:
Q  115 actctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
    ||||||| |||  ||||||||| |||||| |||| | |||||||||||||| || | || |||| || ||||| ||||||||  ||||||||| |||||    
T  43513202 actctgattgtacgagtgaaattatttagggtttgagtttctatttatataaaaagagttataaattgattttttacattcgaaacgggtttgagtatg 43513104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 49741111 - 49741069
Alignment:
Q  184 ttttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||    
T  49741111 ttttctgcattcgggacgggtttgggtatgggttcggggtggg 49741069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 9982997 - 9982952
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||||| ||||||||| ||||||||||||||| ||| ||||||    
T  9982997 taattttctgcattcgggatgggtttgggtatgggttcggggtggg 9982952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 29936398 - 29936443
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  29936398 taattttttacatttgggacgggtttgggtatgggttcggggtggg 29936443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 49250877 - 49250836
Alignment:
Q  184 ttttctacattcgggacgggtttgggtatgggctcgaggtgg 225  Q
    |||| |||||| |||||||||||||||||||| |||||||||    
T  49250877 ttttttacatttgggacgggtttgggtatgggttcgaggtgg 49250836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 51421840 - 51421885
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  51421840 taattttttacatttgggacgggtttgggtatgggttcggggtggg 51421885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 9402413 - 9402604
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgtga---------ctaagactctgact 123  Q
    ||||| |||||| ||||||||| ||| | |||||||| |||||| ||| |||||||||||||||||||||  |||||         |  |||||||||||    
T  9402413 atggtgatggagaagagagaggccgaaaatgtgagatatggaaggagaaaagagagaactatgataagtgagtgtgatatgaaagacctagactctgact 9402512  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    || |||||||||| |||||| ||||   |||||||||||||| | |||||| ||| || |||||||||||||| ||| |||||| |||||||    
T  9402513 gtgtgagtgaaatgatttagggtttgggtttctatttatataaatggggtactaaattgattttctacattcgagacaggtttgagtatggg 9402604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 13768989 - 13769087
Alignment:
Q  117 tctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    ||||||||| | | ||||||||||||  |||| | |||| ||||||||| |||| ||||||| || ||||||||||||| |||||||||||| ||||||    
T  13768989 tctgactgtgttactgaaataatttatggtttgagtttcaatttatataaaaggagtaataaattgattttctacattcaggacgggtttggatatggg 13769087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 1948055 - 1947864
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg-----catgtga----ctaagactctgact 123  Q
    ||||| |||||  ||||||||||| ||| |||||||| || ||||||| ||||| |||||||||||||||     ||| |||    |  | |||||||||    
T  1948055 atggtcatggacaagagagaggtcaagattgtgagatatgaaagtagaaaagagggaactatgataagtgagtgtcatctgaaagtcagatactctgact 1947956  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    || |||||  ||| | |||| ||||  |||| |||||||||| |||||||||||| || |||||||||||| || ||| ||||| |||||||    
T  1947955 gtgtgagtataatgacttagggtttggatttttatttatataaaaggggtaataaattgattttctacatttggaacgagtttgagtatggg 1947864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 34346270 - 34346081
Alignment:
Q  41 ggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg-----catgt----gactaagactctgactgtttgagt 131  Q
    |||| ||| ||||| ||||| |||||||| |||||| ||| |||| ||||||||||||||||     ||| |    |||| ||||||||||||| |||||    
T  34346270 ggagaagaaagaggccgagaatgtgagatatggaagaagaaaagatagaactatgataagtgactctcatctaaaagactgagactctgactgtgtgagt 34346171  T
Q  132 gaaataatttagagtttcaatttctatttatatat---------aaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||| |||||| ||||   ||||||||||||||          |||| ||||||| |||||||||||||||||| |||| |||||||||    
T  34346170 gaaatgatttagggtttgggtttctatttatataatttatataaaaggagtaataaattaattttctacattcggaacggatttgggtat 34346081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 10925623 - 10925506
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    |||||| ||| ||| ||| | |||||||| |||||| ||||||  ||||||||||||| ||||  |||||| ||| |||| ||||||||| | | ||||     
T  10925623 gactaaaactttgattgtgttagtgaaatgatttagggtttcagattctatttatataaaaggaataataaattatttttttacattcggaatgagttta 10925524  T
Q  208 ggtatgggctcgaggtgg 225  Q
    |||||||| ||| |||||    
T  10925523 ggtatgggttcggggtgg 10925506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 256668 - 256565
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctattt-atatataaggggtaataatttaattttctacattcgggacgggtttgggta 211  Q
    ||||||||||| | |||  ||| |||||||||||||   ||||||||| | ||| |||||||| ||| || ||||||||||||  ||| |||||||||||    
T  256668 agactctgactatgtgaaagaattaatttagagtttgtgtttctattttaaataaaaggggtagtaaattgattttctacatttaggaggggtttgggta 256569  T
Q  212 tggg 215  Q
    ||||    
T  256568 tggg 256565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 2126870 - 2126819
Alignment:
Q  48 agagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataa 99  Q
    ||||||| | |||||||||||| |||||| ||| ||||||||||||||||||    
T  2126870 agagaggccaagagtgtgagatatggaaggagaaaagagagaactatgataa 2126819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 8321079 - 8320868
Alignment:
Q  13 gatgatggcgatcggtagcaatggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt----- 107  Q
    |||||||| ||||| |||| ||  | ||| || |||| |||||| |||||||||||| |||| | ||| || ||| |||||||||||||| ||||         
T  8321079 gatgatggggatcgatagctataatgatgaagaagagggaggtcaagagtgtgagatatggacgaagaaaatagataactatgataagtgaatgtcgtct 8320980  T
Q  108 ----gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacggg 203  Q
        |||  ||||||||||||| | |||||||| |||||| |||| | ||||||||||  || | || ||||||| || ||||| | ||||| | |||||    
T  8320979 gaaagaccgagactctgactgtgtaagtgaaatgatttagggtttaagtttctatttacgtaaatggagtaataagttgattttttgcattcagaacggg 8320880  T
Q  204 tttgggtatggg 215  Q
    | ||||||||||    
T  8320879 tctgggtatggg 8320868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 5863487 - 5863445
Alignment:
Q  184 ttttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||| |||||| |||||||||||||||||||| ||||||||||    
T  5863487 ttttttacatttgggacgggtttgggtatgggttcgaggtggg 5863445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 14321794 - 14321876
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttggg 209  Q
    |||||||||| |||||   ||| | |||||||||||||| ||  |||||||| ||||||||||||||||  ||| ||||||||    
T  14321794 tgagtgaaatgatttaagatttgagtttctatttatataaaataggtaataaattaattttctacattcatgacaggtttggg 14321876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 29341239 - 29341269
Alignment:
Q  183 attttctacattcgggacgggtttgggtatg 213  Q
    |||||||||||||||||||||||||||||||    
T  29341239 attttctacattcgggacgggtttgggtatg 29341269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 12141366 - 12141411
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  12141366 taattttttacatttgggacgggtttgggtatgggttcggggtggg 12141411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 20348916 - 20348957
Alignment:
Q  60 agtgtgagatgtggaagtagataagagagaactatgataagt 101  Q
    |||||||||| |||||| ||| ||||||||||||||||||||    
T  20348916 agtgtgagatatggaaggagaaaagagagaactatgataagt 20348957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 24602963 - 24602918
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||||||||||| || ||||||||||||||| ||| ||||||    
T  24602963 taattttctacattcgtgatgggtttgggtatgggttcggggtggg 24602918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 27738753 - 27738798
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  27738753 taattttttacatttgggacgggtttgggtatgggttcggggtggg 27738798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 32853825 - 32853870
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  32853825 taattttttacatttgggacgggtttgggtatgggttcggggtggg 32853870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 4754 - 4673
Alignment:
Q  114 gactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattc 195  Q
    |||||||||||| |||||||||| |||||||||||  ||||||||||||||| ||||||| ||||||| |||||||||||||    
T  4754 gactctgactgtgtgagtgaaatgatttagagttttgatttctatttatataaaaggggttataatttgattttctacattc 4673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 37032273 - 37032179
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    ||||||||| ||| |||||||||| |||||| |||| | ||| |||||||||| || ||||||||| |||||||||||||||| ||| |||||||    
T  37032273 agactctgattgtatgagtgaaatgatttagggtttgagtttttatttatataaaatgggtaataaattaattttctacattcaggatgggtttg 37032179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 30904988 - 30904877
Alignment:
Q  115 actctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgg 214  Q
    ||||||||| | |||||||||| ||| || ||||   |||||||||||||| |||||||| ||| || |||| ||||||||| ||||| |||||||||||    
T  30904988 actctgactatatgagtgaaatgattaagggtttgggtttctatttatataaaaggggtagtaaattgatttcctacattcgagacggatttgggtatgg 30904889  T
Q  215 gctcgaggtggg 226  Q
    | ||| ||||||    
T  30904888 gttcggggtggg 30904877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 3414708 - 3414607
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||| ||||| | |||||||||| |||||| ||||| |||| |||||||| | |||||||| |||  | |||||||||||| || ||||||||| ||||    
T  3414708 agactttgactatgtgagtgaaatgatttagggtttcgatttttatttatagaaaaggggtattaaaatgattttctacattaggtacgggtttgagtat 3414609  T
Q  213 gg 214  Q
    ||    
T  3414608 gg 3414607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 27252392 - 27252460
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg 102  Q
    ||||| || ||| ||||||||| |||||||||||||| |||||| ||| |||||||||||| ||||||||    
T  27252392 atggtgattgagaagagagaggccgagagtgtgagatatggaaggaga-aagagagaactaagataagtg 27252460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 34592993 - 34593049
Alignment:
Q  46 agagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtg 102  Q
    |||||||||||||||||||||||| |||||| ||| |  | ||||||||||||||||    
T  34592993 agagagaggtcgagagtgtgagatatggaaggagaaacaatagaactatgataagtg 34593049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 40890203 - 40890254
Alignment:
Q  48 agagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataa 99  Q
    |||||||||| ||||||||||  |||||| ||| ||||||||||||||||||    
T  40890203 agagaggtcgggagtgtgagagatggaaggagaaaagagagaactatgataa 40890254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 42243346 - 42243400
Alignment:
Q  159 ttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
    ||||||| |||||||||||| || ||||||||||||  ||| |||||||||||||    
T  42243346 ttatataaaaggggtaataaattgattttctacatttaggatgggtttgggtatg 42243400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 38347525 - 38347570
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctat 158  Q
    ||||||||||||| |||||||||| ||||||||||| | |||||||    
T  38347525 agactctgactgtatgagtgaaatgatttagagtttgagtttctat 38347570  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 39728652 - 39728697
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  39728652 taattttttacatttgggacgggtttgggtatgggttcggggtggg 39728697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 44172607 - 44172652
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  44172607 taattttttacatttgggacgggtttgggtatgggttcggggtggg 44172652  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 44179307 - 44179352
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  44179307 taattttttacatttgggacgggtttgggtatgggttcggggtggg 44179352  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 49580045 - 49580090
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||| ||||||| ||||||||||    
T  49580045 taattttttacatttgggacgggtttgagtatgggttcgaggtggg 49580090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 27937666 - 27937734
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattc 195  Q
    |||||||||| |||||| ||||   |||||||||||||| |||  ||||||| ||||||| ||||||||    
T  27937666 tgagtgaaatgatttagggtttaggtttctatttatataaaagctgtaataaattaatttcctacattc 27937734  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 30682802 - 30682846
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtgg 225  Q
    ||||||||||||||| ||||||||||| |||| || |||||||||    
T  30682802 taattttctacattcaggacgggtttgagtataggttcgaggtgg 30682846  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 19440186 - 19440072
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttct-acattcgggacgggtttgggta 211  Q
    ||||||||||| | |||||||||| |||||||||||   ||||||||||||   |||||||  ||| || ||||| | ||||||||||||||||||||||    
T  19440186 agactctgactatgtgagtgaaatgatttagagtttgggtttctatttataccaaaggggtggtaaattgatttttttacattcgggacgggtttgggta 19440087  T
Q  212 tgggctcgaggtggg 226  Q
    |||| |||| |||||    
T  19440086 tgggttcgaagtggg 19440072  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 29292636 - 29292722
Alignment:
Q  129 agtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatggg 215  Q
    ||||||||||||||| ||||  |||||| |||||||| |||||||| ||| || |||||||||||||| |||| |||| ||||||||    
T  29292636 agtgaaataatttagggtttggatttctctttatataaaaggggtagtaaattgattttctacattcgagacgagtttaggtatggg 29292722  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 11472975 - 11472788
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt---------gactaagactctgact 123  Q
    ||||| || ||| |||||||||| || |||||||||| |||||| |||||||||||||||||||||||||  |||         |||| ||||||| |||    
T  11472975 atggtgatagagaagagagaggtaga-agtgtgagatatggaaggagataagagagaactatgataagtgagtgtcatctaaaagactgagactctaact 11472877  T
Q  124 gtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
       |||||||||| |||||| ||||   |||||||||||||| ||||  |||||| || ||||||| |||| ||||||| ||||||||||    
T  11472876 acgtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattgattttct-catttgggacggatttgggtatg 11472788  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 23475438 - 23475325
Alignment:
Q  114 gactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttct-acattcgggacgggtttgggtat 212  Q
    |||||||||| | |||||||||| |||||||||||   ||| |||||||| | || ||||| ||| || ||||| | |||||||||||||||||||||||    
T  23475438 gactctgactatgtgagtgaaatgatttagagtttgggtttttatttatacaaaacgggtagtaaattgatttttttacattcgggacgggtttgggtat 23475339  T
Q  213 gggctcgaggtggg 226  Q
    ||| |||| |||||    
T  23475338 gggttcgaagtggg 23475325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 36251110 - 36251009
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    |||| ||| ||||||||| | ||||||||  |||||||||| | ||| |||||||||| ||   ||||||| || |||||||||||||||||||||||||    
T  36251110 gactgagagtctgactgtataagtgaaatggtttagagttttagtttttatttatataaaatatgtaataaattgattttctacattcgggacgggtttg 36251011  T
Q  208 gg 209  Q
    ||    
T  36251010 gg 36251009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 43550595 - 43550491
Alignment:
Q  108 gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttg 207  Q
    |||| ||||||||||  |||||||||||| |||||| ||||   |||||||||||||| |||||||||||| |  | |||| |||||| |||||||||||    
T  43550595 gactgagactctgaca-tttgagtgaaatgatttagggtttgggtttctatttatatagaaggggtaataaatagactttccacattcaggacgggtttg 43550497  T
Q  208 ggtatg 213  Q
     |||||    
T  43550496 tgtatg 43550491  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 3773989 - 3774089
Alignment:
Q  115 actctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatgg 214  Q
    ||||||||||| ||||| |||| |||| | ||||   || ||| ||||||| |||||||||||| || |||||||| ||||||||||| |||| ||||||    
T  3773989 actctgactgtgtgagtaaaatgattttgcgtttgggttcctaattatataaaaggggtaataaattgattttctaaattcgggacggatttgagtatgg 3774088  T
Q  215 g 215  Q
    |    
T  3774089 g 3774089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 23533780 - 23533665
Alignment:
Q  113 agactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaat--aatttaattttctacattcgggacgggtttgggt 210  Q
    ||||||||||| | |||||||||| |||||||||||   |||||| ||||| | ||||||| |   |||| | |||| ||||||||||||| ||||||||    
T  23533780 agactctgactatgtgagtgaaatgatttagagtttgggtttctaattatacaaaaggggttagtaaattgatttttttacattcgggacgagtttgggt 23533681  T
Q  211 atgggctcgaggtggg 226  Q
    ||||| |||| |||||    
T  23533680 atgggttcgaagtggg 23533665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 31345335 - 31345531
Alignment:
Q  13 gatgatggcgatcggtagcaatggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaactatgataagtgcatgt----- 107  Q
    |||||||||||||| |  | ||||| || ||| ||||||| ||| | | |||||||| |||||| ||| ||||||||| |||||||||||  |||         
T  31345335 gatgatggcgatcgatgactatggtgattgagaagagagaagtcaaaaatgtgagatatggaagaagaaaagagagaattatgataagtgagtgtcatct 31345434  T
Q  108 ----gactaagactctgactgtttgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggac 200  Q
        |||| ||||| ||| ||| |||||||||| || |||||||| | |||||||||||||| ||  |||| ||| || ||||| ||||||||||||    
T  31345435 aaatgactgagactttgattgtgtgagtgaaatgatatagagtttgagtttctatttatataaaaatggtagtaaattgattttttacattcgggac 31345531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 27850433 - 27850399
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatggg 215  Q
    |||||||||||||||||||||||||||||||||||    
T  27850433 taattttctacattcgggacgggtttgggtatggg 27850399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 37217848 - 37217898
Alignment:
Q  48 agagaggtcgagagtgtgagatgtggaagtagataagagagaactatgata 98  Q
    ||||||| |||||||||||||| |||||| ||| |||||||||||||||||    
T  37217848 agagaggccgagagtgtgagatatggaaggagagaagagagaactatgata 37217898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 8265657 - 8265714
Alignment:
Q  33 atggttatggagcagagagaggtcgagagtgtgagatgtggaagtagataagagagaa 90  Q
    ||||| ||| || ||||||||||||||||||||| || |||||| |||||||||||||    
T  8265657 atggtgatgaagaagagagaggtcgagagtgtgacatatggaaggagataagagagaa 8265714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 3157040 - 3157100
Alignment:
Q  152 tttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtat 212  Q
    ||||||||||||||  ||||||||||| || ||||||||  || |||||||||||||||||    
T  3157040 tttctatttatatagtaggggtaataaattgattttctatgtttgggacgggtttgggtat 3157100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 3920524 - 3920569
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    |||||||||||||||||||| | |||||||||||| ||| ||||||    
T  3920524 taattttctacattcgggacagttttgggtatgggttcggggtggg 3920569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 16866155 - 16866200
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||| |||||| |||||||||||||||||||| ||| ||||||    
T  16866155 taattttttacatttgggacgggtttgggtatgggttcggggtggg 16866200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 23328596 - 23328641
Alignment:
Q  181 taattttctacattcgggacgggtttgggtatgggctcgaggtggg 226  Q
    ||||||||| |||||||||||||||||||||| || ||| ||||||    
T  23328596 taattttctccattcgggacgggtttgggtataggatcggggtggg 23328641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1322 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 1038 - 1120
Alignment:
Q  127 tgagtgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttggg 209  Q
    |||||||||| |||||   ||| | |||||||||||||| || ||||||||| ||||||||||||||||  ||||||||||||    
T  1038 tgagtgaaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttctacattcatgacgggtttggg 1120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 14789 - 14871
Alignment:
Q  131 tgaaataatttagagtttcaatttctatttatatataaggggtaataatttaattttctacattcgggacgggtttgggtatg 213  Q
    |||||| |||||  |||| | |||||||||||||| |||||| ||||| || || || ||| ||| |||||||||||||||||    
T  14789 tgaaatgatttaatgtttaagtttctatttatataaaaggggaaataaattgatgttttaccttcaggacgggtttgggtatg 14871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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