View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_73 (Length: 216)
Name: NF18475_low_73
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 3731696 - 3731881
Alignment:
| Q |
20 |
ccattgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaatgaacatgcagggtatcttactcttagtgttttctcttgttctgaca |
119 |
Q |
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| T |
3731696 |
ccattgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaacgaacatgcagggtatctaactcttagtgttttctcttgttctgaca |
3731795 |
T |
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| Q |
120 |
catgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacaggt |
205 |
Q |
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| T |
3731796 |
catgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacaggt |
3731881 |
T |
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Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 11684014 - 11684197
Alignment:
| Q |
20 |
ccattgacatccaagatacttgtggtggaagctatgtgtcttttagctgctaatgaacatgcagggtatcttactcttagtgttttctcttgttctgaca |
119 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11684014 |
ccattgccatccaagatacttgtggtggatgctatgtgtcttttggctgctaatgaacatgcagggtatcttactcttagggttttctcttgttctgaca |
11684113 |
T |
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| Q |
120 |
catgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaatatctatcatcccaattctctcaatatacacag |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
11684114 |
catgatgcttgataagcctttcttgtgtggttatttgccacagtttgttaacatctatcatcccaattctctcgatatacacag |
11684197 |
T |
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