View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18475_low_8 (Length: 625)
Name: NF18475_low_8
Description: NF18475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18475_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 10044136 - 10044747
Alignment:
| Q |
1 |
aagggttgtgaggattttatcaagaaggacaaagaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggttggctaag |
100 |
Q |
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| T |
10044136 |
aagggttgtgaggattttatcaagaaggacaaagaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggctggctaag |
10044235 |
T |
|
| Q |
101 |
agaatagttagaggagatgttcctagtaatcttgccgatgttagattatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10044236 |
agaatagttagaggagatgttcctagcaatcttgctgatgttaggttatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaat |
10044335 |
T |
|
| Q |
201 |
ttgaacaaaggttgaaggcagttttgaaagaagtggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtca |
300 |
Q |
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| T |
10044336 |
ttgaacaaaggttgaaggcagttttgaaagaagtggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtca |
10044435 |
T |
|
| Q |
301 |
atgtcaaggatcaatggatgctgctaatcttttgaaacctatgcttgctcgtggccaacttagatgcatcggtgcaacaacacttgatgaatatagaaaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10044436 |
atgtcaaggatcaatggatgctgctaatcttttgaaacctatgcttgctcgtggccaacttagatgcatcggtgcaacaacacttgatgaatatagaaaa |
10044535 |
T |
|
| Q |
401 |
tatgttgaaaaggatgcagcatttgaaaggaggtttcaacaggttcatgtttctgaacctagtgtgcctgataccattagtattcttcgtggactaaaag |
500 |
Q |
| |
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| T |
10044536 |
tatgttgaaaaggatgcagcatttgaaaggaggtttcaacaggttcatgtttctgaacctagtgtgcctgataccattagtattcttcgtggactaaaag |
10044635 |
T |
|
| Q |
501 |
agaaatacgagggtcatcatggtgttcgaattcaagaccgtgcaattgttgttgcagctcagatgtctagtcggtacataactggtatagataagttctc |
600 |
Q |
| |
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| T |
10044636 |
agaaatacgagggtcatcatggtgttcgaattcaagaccgtgcaattgttgttgcagctcagatgtctagtcggtacataactggtatagataagttctc |
10044735 |
T |
|
| Q |
601 |
ttgattttaatt |
612 |
Q |
| |
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|||||||||||| |
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| T |
10044736 |
ttgattttaatt |
10044747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 588
Target Start/End: Original strand, 45466252 - 45466835
Alignment:
| Q |
5 |
gttgtgaggattttatcaagaaggacaaagaacaatcctgttattataggtgagccaggtgttggtaaaacagctgttgttgaagggttggctaagagaa |
104 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||| ||||| ||| |||| |||||||| |||||||| ||||| ||||||||||||||||||||| |||| | |
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| T |
45466252 |
gttgtgaggattttgtcaaggaggactaagaataatccagttcttattggtgagcctggtgttgggaaaactgctgttgttgaagggttggctcagagga |
45466351 |
T |
|
| Q |
105 |
tagttagaggagatgttcctagtaatcttgccgatgttagattatttgctttggatatgggagcgttagtcgctggtactcagtataggggacaatttga |
204 |
Q |
| |
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| T |
45466352 |
ttgttagaggtgatgttcctagcaatcttgctgatgttaggttaattgctctggatatgggagcattggttgctggtgcgaagtataggggagaatttga |
45466451 |
T |
|
| Q |
205 |
acaaaggttgaaggcagttttgaaagaagtggaagatgctgaagggaaggttattgttttcattgatgaaattcatcttgttctcggtgccggtcaatgt |
304 |
Q |
| |
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| | ||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||||| || || ||| | |
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| T |
45466452 |
agagaggttgaaggctgttttgaaagaagttgaagaagctgaagggaaggttattcttttcattgatgagattcatcttgttcttggagctggtagaaca |
45466551 |
T |
|
| Q |
305 |
caaggatcaatggatgctgctaatcttttgaaacctatgcttgctcgtggccaacttagatgcatcggtgcaacaacacttgatgaatatagaaaatatg |
404 |
Q |
| |
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|||||||||||||||||||||||||||| || || |||||||||||||| || ||| |||| || ||||| ||||||||||| || ||||| || |||| |
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| T |
45466552 |
gaaggatcaatggatgctgctaatctttttaagccaatgcttgctcgtggacagcttcgatgtattggtgctacaacacttgaggagtataggaagtatg |
45466651 |
T |
|
| Q |
405 |
ttgaaaaggatgcagcatttgaaaggaggtttcaacaggttcatgtttctgaacctagtgtgcctgataccattagtattcttcgtggactaaaagagaa |
504 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||| || ||||| |||||||||||||||||| |||||||| |
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| T |
45466652 |
ttgaaaaagatgcagcatttgaaagaaggtttcaacaggtttatgtggctgaacctagtgttccggatacgattagtattcttcgtggattaaaagagcg |
45466751 |
T |
|
| Q |
505 |
atacgagggtcatcatggtgttcgaattcaagaccgtgcaattgttgttgcagctcagatgtctagtcggtacataactggtat |
588 |
Q |
| |
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||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||||||| ||||| |
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| T |
45466752 |
atatgagggtcatcatggtgttcgaattcaagatcgcgcgattgtagttgcagctcaattgtctagtcggtacataaccggtat |
45466835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 415
Target Start/End: Complemental strand, 4398411 - 4398310
Alignment:
| Q |
314 |
atggatgctgctaatcttttgaaacctatgcttgctcgtggccaacttagatgcatcggtgcaacaacacttgatgaatatagaaaatatgttgaaaagg |
413 |
Q |
| |
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|||||||||| |||||| || || |||||||||| ||| || |||| ||||||| |||||||||||| | || || ||||| |||||| |||| |||| |
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| T |
4398411 |
atggatgctggtaatctcttaaagcctatgcttggtcgaggggaactgcgatgcattggtgcaacaacattagacgagtataggaaatatattgagaagg |
4398312 |
T |
|
| Q |
414 |
at |
415 |
Q |
| |
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|| |
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|
| T |
4398311 |
at |
4398310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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