View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18476_low_3 (Length: 311)
Name: NF18476_low_3
Description: NF18476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18476_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 27349249 - 27349004
Alignment:
| Q |
14 |
cacagacgaattaggtttaacaccttcccttcctctcagcggaatcaacggcggcgaagactgcaaaacagtagaaaatccaaacggaatatcactgtta |
113 |
Q |
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| T |
27349249 |
cacagaagaattaggtttaacaccttcccttcctctcagcggaatcaacggcggcgaagactgcaaaacagtagaaaatccaaacggaatatcactgtta |
27349150 |
T |
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| Q |
114 |
gaacgccggtgagattttctcggcggtaaagaaggggttctagcagcaaacggaggtaacggagaatgagaagtgacatcacgatcttccatggacacgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27349149 |
gaacgccggtgagattttctcggcggtaaagaagggtttctagcagcaaacggaggtaacggagaatgagaagtgacgtcacgatcttccatggacacgt |
27349050 |
T |
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| Q |
214 |
cagcatgatccgacgtggaagaagattcgcgaaacgtgcaagggct |
259 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27349049 |
cagcatgatccgacgtggaggaagattcgcgaaacgtgcaagggct |
27349004 |
T |
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