View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18476_low_4 (Length: 256)

Name: NF18476_low_4
Description: NF18476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18476_low_4
NF18476_low_4
[»] chr5 (10 HSPs)
chr5 (1-240)||(18313157-18313396)
chr5 (4-94)||(7161663-7161753)
chr5 (4-94)||(18593584-18593674)
chr5 (4-94)||(7452930-7453020)
chr5 (6-87)||(698711-698792)
chr5 (7-87)||(5656749-5656829)
chr5 (4-87)||(34378441-34378524)
chr5 (7-94)||(18255099-18255186)
chr5 (7-57)||(29087823-29087873)
chr5 (54-94)||(41250854-41250894)
[»] chr7 (22 HSPs)
chr7 (4-94)||(47325534-47325624)
chr7 (4-94)||(31971784-31971874)
chr7 (4-94)||(5859932-5860022)
chr7 (4-94)||(44353213-44353303)
chr7 (4-94)||(10244522-10244612)
chr7 (4-87)||(6585228-6585311)
chr7 (4-87)||(43482247-43482329)
chr7 (4-94)||(25161150-25161240)
chr7 (4-94)||(33434480-33434570)
chr7 (4-93)||(3867457-3867545)
chr7 (4-87)||(3419055-3419136)
chr7 (4-87)||(34391524-34391607)
chr7 (4-87)||(42454390-42454473)
chr7 (4-92)||(11378772-11378859)
chr7 (25-92)||(37795359-37795426)
chr7 (25-92)||(37795687-37795754)
chr7 (35-94)||(40726140-40726199)
chr7 (4-58)||(38306602-38306656)
chr7 (25-87)||(35745488-35745550)
chr7 (4-80)||(3419321-3419395)
chr7 (4-87)||(48161697-48161779)
chr7 (4-93)||(41089396-41089482)
[»] chr3 (21 HSPs)
chr3 (4-94)||(2392152-2392242)
chr3 (4-94)||(2393915-2394005)
chr3 (7-87)||(21343692-21343772)
chr3 (4-87)||(47236040-47236123)
chr3 (4-94)||(19176848-19176938)
chr3 (4-94)||(45164195-45164285)
chr3 (4-87)||(40023225-40023308)
chr3 (4-87)||(50305230-50305313)
chr3 (4-94)||(31483222-31483312)
chr3 (4-94)||(34475407-34475497)
chr3 (4-87)||(50559986-50560069)
chr3 (4-65)||(30352117-30352178)
chr3 (4-87)||(23328004-23328087)
chr3 (4-87)||(45399127-45399210)
chr3 (4-94)||(4463734-4463824)
chr3 (4-86)||(9583710-9583792)
chr3 (4-94)||(17551299-17551389)
chr3 (4-82)||(43012719-43012796)
chr3 (16-92)||(37158660-37158735)
chr3 (15-87)||(53248253-53248325)
chr3 (4-87)||(25506726-25506809)
[»] scaffold0172 (1 HSPs)
scaffold0172 (4-93)||(19260-19349)
[»] chr4 (17 HSPs)
chr4 (4-94)||(7703029-7703118)
chr4 (4-94)||(35329349-35329439)
chr4 (4-87)||(46698435-46698518)
chr4 (23-87)||(30167219-30167283)
chr4 (4-87)||(2826123-2826206)
chr4 (4-94)||(27555579-27555670)
chr4 (4-94)||(4306047-4306136)
chr4 (4-87)||(35341007-35341092)
chr4 (11-87)||(9750116-9750191)
chr4 (4-87)||(30964779-30964862)
chr4 (4-94)||(8705789-8705879)
chr4 (4-78)||(20464931-20465005)
chr4 (4-87)||(31050317-31050400)
chr4 (1-55)||(49528425-49528479)
chr4 (6-87)||(36689461-36689542)
chr4 (4-87)||(52868767-52868851)
chr4 (4-93)||(11281375-11281464)
[»] chr1 (14 HSPs)
chr1 (4-94)||(30685573-30685663)
chr1 (4-94)||(46814114-46814204)
chr1 (4-94)||(6804880-6804969)
chr1 (7-87)||(40216162-40216242)
chr1 (4-87)||(24449587-24449669)
chr1 (4-94)||(7002529-7002619)
chr1 (4-94)||(31584689-31584778)
chr1 (5-87)||(41920800-41920882)
chr1 (4-87)||(27031497-27031580)
chr1 (4-94)||(14320665-14320755)
chr1 (6-94)||(5389077-5389160)
chr1 (4-94)||(24684142-24684231)
chr1 (4-65)||(5459502-5459563)
chr1 (4-87)||(24659272-24659344)
[»] chr2 (21 HSPs)
chr2 (4-87)||(5254595-5254677)
chr2 (4-87)||(14436923-14437006)
chr2 (4-94)||(39338510-39338600)
chr2 (4-94)||(10524440-10524529)
chr2 (4-85)||(387518-387599)
chr2 (7-94)||(3745686-3745773)
chr2 (4-87)||(14106179-14106261)
chr2 (9-87)||(43248883-43248961)
chr2 (4-94)||(43816096-43816186)
chr2 (7-87)||(13512495-13512575)
chr2 (6-78)||(17116553-17116625)
chr2 (11-94)||(7455601-7455683)
chr2 (4-87)||(7874618-7874702)
chr2 (17-93)||(15457817-15457893)
chr2 (4-87)||(41877208-41877291)
chr2 (26-94)||(25280964-25281032)
chr2 (4-87)||(7461018-7461100)
chr2 (4-87)||(14405541-14405623)
chr2 (9-84)||(22888552-22888626)
chr2 (28-94)||(9823695-9823761)
chr2 (4-86)||(45311461-45311543)
[»] chr8 (22 HSPs)
chr8 (4-94)||(12897925-12898015)
chr8 (4-94)||(20138768-20138858)
chr8 (4-94)||(22773963-22774053)
chr8 (4-94)||(31207011-31207101)
chr8 (4-87)||(35815900-35815983)
chr8 (6-94)||(32065934-32066022)
chr8 (4-87)||(15821033-15821115)
chr8 (4-87)||(16457131-16457214)
chr8 (4-87)||(37986511-37986594)
chr8 (4-94)||(36631165-36631254)
chr8 (35-94)||(9659475-9659534)
chr8 (4-87)||(24995051-24995134)
chr8 (4-93)||(35821597-35821685)
chr8 (4-87)||(3584079-3584163)
chr8 (7-87)||(9519851-9519931)
chr8 (7-87)||(13538330-13538410)
chr8 (7-87)||(13686064-13686144)
chr8 (4-63)||(27889188-27889247)
chr8 (4-63)||(27947846-27947905)
chr8 (4-62)||(10837918-10837976)
chr8 (54-94)||(34866309-34866349)
chr8 (7-87)||(38577442-38577522)
[»] chr6 (7 HSPs)
chr6 (4-87)||(3117836-3117919)
chr6 (4-94)||(3254299-3254389)
chr6 (4-94)||(15944341-15944431)
chr6 (10-87)||(15132496-15132573)
chr6 (4-94)||(10542173-10542262)
chr6 (4-51)||(33697789-33697836)
chr6 (46-87)||(14663438-14663478)
[»] scaffold0085 (1 HSPs)
scaffold0085 (4-87)||(48677-48760)
[»] scaffold0343 (1 HSPs)
scaffold0343 (7-87)||(6050-6130)
[»] scaffold0434 (1 HSPs)
scaffold0434 (4-63)||(2353-2412)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18313396 - 18313157
Alignment:
Q  1 ttttggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgattnnnnnn 100  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |  | ||||||||||||||||||||||||||          
T  18313396 ttttggtgtaccgtctatatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatatttaccgattaaaaaa 18313297  T
Q  101 nncattggaaatatttctgttgtttttgtttccgtatggggtatgatagtcaaaactggagaattatctcgatttactccaaaagattttgtgtaatctt 200  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18313296 aacattggaaatatttctgttgtttttgtttccgtatggggtatgatagtcaaaactggagaattatctcgatttactccaaaagattttgtgtaatctt 18313197  T
Q  201 tgattccttggttacaaacacctctgtgctgtgctgtgct 240  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  18313196 tgattccttggttacaaacacctctgtgttgtgctgtgct 18313157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 7161753 - 7161663
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||||||||||||||| ||| ||||| |||||||||| |||||| ||||||||||| | ||| ||||||||||||||||| ||||||    
T  7161753 tggtgtaccgtctatatgctacactatttgtatcttatttcgtccatatcttgcgtcttgtggggaagacgtttaataatatttgccgatt 7161663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 18593584 - 18593674
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| ||||||| |  ||||| |||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  18593584 tggtgtaccgtctatatgcggcaccatatttatcttgtttcgtccataccttgcatcttgcggggatgacgtttaataatatttgccgatt 18593674  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 7452930 - 7453020
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| |||||  ||  |||||||||||||||||||  |||||| |||||||||||||| ||||||    
T  7452930 tggtgtaccgtctatatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttgccgatt 7453020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 698711 - 698792
Alignment:
Q  6 gtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||   |||| |||||||||||||||    
T  698711 gtgtaccgtctatatgcggcaccatttgtatcatatttcatccataccttacgtcttgcagagatgtcgtttaataatattt 698792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 5656829 - 5656749
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||| ||| |||||| |||||||||| | ||||||||||||||||||  |||| |||||||||||||||    
T  5656829 tgtaccgtctatatgcggcatcatttgtatcttatttcgttcataccttgcgtcttgcggtgatggcgtttaataatattt 5656749  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 34378441 - 34378524
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| ||||  | || ||||| ||||||||||||||  |||| |||||||||||||||    
T  34378441 tggtgtaccgtctatatgcggcaccatttgtatctcgtctcgtccatgccttgcgtcttgcggagatggcgtttaataatattt 34378524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 18255186 - 18255099
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||||||||||| |||| ||||| ||||| |||| || ||||| ||| |||| || |||| |||||||| ||||||| ||||||    
T  18255186 tgtaccgtctatatgcggcactatttgtatcttgtttcgtctataccctgcatcttacggggataacgtttaacaatatttgccgatt 18255099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 29087823 - 29087873
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgc 57  Q
    |||||||||||||||| |||||||||| ||||| |||| ||||||||||||    
T  29087823 tgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgc 29087873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 41250894 - 41250854
Alignment:
Q  54 ttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||| |||||||||||| |||||||||||||| ||||||    
T  41250894 ttgcgttttgcgaggatgatgtttaataatatttgccgatt 41250854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 47325624 - 47325534
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  47325624 tggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttacgaggatgacgtttaataatatttgccgatt 47325534  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 31971874 - 31971784
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  31971874 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 31971784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 5860022 - 5859932
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||| | ||||||||||| ||||||||||||||||||||| ||||||    
T  5860022 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaataatatttgccgatt 5859932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 44353303 - 44353213
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||| ||||||||| |||||||||| ||||| |||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  44353303 tggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccgatt 44353213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 10244522 - 10244612
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||| |||||||||| |||||||||| ||||| |||| ||||||||||||||||||||  ||||  |||||||||||||| ||||||    
T  10244522 tggtgtactgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggagatggagtttaataatatttgccgatt 10244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 6585228 - 6585311
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||  |||||||||| ||||| |||| ||||| |||||| ||||||| ||||| |||||||||||||||    
T  6585228 tggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggcgtttaataatattt 6585311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 43482247 - 43482329
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||| ||||| |||| ||||| |||||||||| ||||||||||||||| | || |||||||||||||||||||||    
T  43482247 tggtgtaccgtctgtatgcagcactatttgtatcttatttcgtccataccttgcgtc-tacggggatgacgtttaataatattt 43482329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 25161150 - 25161240
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||| | |||||||||||||||| |||| | ||||||||   |||| || ||||||||||||||||||||| ||||||    
T  25161150 tggtgtaccgtctatatacggcaccatttgcatcttgtttcgttcataccttaaatcttacggggatgacgtttaataatatttgccgatt 25161240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 33434570 - 33434480
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||| | | |||||||| |||||  ||| |||||||||||||| ||||| ||||| ||||||||||||||| ||||||    
T  33434570 tggtgtaccgtctatatacagaaccatttgtatcttgcttcgtccataccttgcgtattgcggggatggcgtttaataatatttgccgatt 33434480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 3867457 - 3867545
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgat 93  Q
    ||||||||||||||||||  |||||||||| ||||| |||| || ||||||| ||||||||| |||||| |||||||||||||| |||||    
T  3867457 tggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtcaataccttacgtcttgcg-ggatgaagtttaataatatttgccgat 3867545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 3419136 - 3419055
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||  || ||| | |||| ||||| |||| |||||||||||||||||||| |||||||||||||||||||||    
T  3419136 tggtgtaccgtctat--gcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattt 3419055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 34391524 - 34391607
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||| ||||||||||| |||  ||||| ||||| |||| |||||||| |||||| |||| |||||||||||||||||||||    
T  34391524 tggtgtatcgtctatatgcggcattatttgtatcttgtttcgtccataccctgcgtcctgcggggatgacgtttaataatattt 34391607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 42454473 - 42454390
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||| |||||||||| |||||||||| | ||| |||| || ||| ||||||||||||| |||||| ||||||||||||||    
T  42454473 tggtgtactgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgcgtcttgcggggatgatgtttaataatattt 42454390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 11378859 - 11378772
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccga 92  Q
    ||||||||||| ||||||| ||| ||| || |||||||| | |||||||||||||||||||| || || ||||||||||||||| ||||    
T  11378859 tggtgtaccgtttatatgcggcatcatctgtatcttatt-cgtccataccttgcgtcttgcggggttggcgtttaataatatttgccga 11378772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 37795359 - 37795426
Alignment:
Q  25 caccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccga 92  Q
    ||||||||| ||||| |||| |||||||||||||||||| | ||| ||||||||||||||||| ||||    
T  37795359 caccatttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccga 37795426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 37795687 - 37795754
Alignment:
Q  25 caccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccga 92  Q
    ||||||||| ||||| |||| |||||||||||||||||| | ||| ||||||||||||||||| ||||    
T  37795687 caccatttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccga 37795754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 40726199 - 40726140
Alignment:
Q  35 atcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||| |||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  40726199 atcttgtttcgtccataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 38306602 - 38306656
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcg 58  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||    
T  38306602 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcg 38306656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 35745550 - 35745488
Alignment:
Q  25 caccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||| ||||| |||| |||||||||||||| || ||  ||||||||||||||||||||    
T  35745550 caccatttgtatcttgtttcgtccataccttgcgttttacggagatgacgtttaataatattt 35745488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 3419395 - 3419321
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaat 80  Q
    |||||||||||||||  || ||| | |||| ||||| |||| |||||||||||||||||||| ||||| ||||||||    
T  3419395 tggtgtaccgtctat--gcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaat 3419321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 48161779 - 48161697
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||| |||||||||||| |||| ||||| || || || | |||||| |||| |||||||  |||||||||||||||||||||    
T  48161779 tggtgtgccgtctatatgcggcactatttgtattttgtt-cgtccatatcttgtgtcttgcagggatgacgtttaataatattt 48161697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 41089482 - 41089396
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgat 93  Q
    ||||||||||||||||||| |||||| ||| ||||| |||| ||||||||||  |||||||   |||| | ||||||||||||| |||||    
T  41089482 tggtgtaccgtctatatgcggcacca-ttgtatcttgtttcgtccatacctt--gtcttgcagagatggcatttaataatatttgccgat 41089396  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 2392242 - 2392152
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  2392242 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccgatt 2392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 2394005 - 2393915
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  2394005 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccgatt 2393915  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 21343692 - 21343772
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||| |||||||||| ||||| |||| ||||||||||| |||||||  |||||||||||||||||||||    
T  21343692 tgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgtgtcttgccgggatgacgtttaataatattt 21343772  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 47236040 - 47236123
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||| |||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||  ||||| |||||||||||||||    
T  47236040 tggtataccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcagggatggcgtttaataatattt 47236123  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 19176848 - 19176938
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||| | |||| ||||||| |||||||||||  | ||||||||||||||||||| ||||||    
T  19176848 tggtgtaccgtctatatgcggcaccatttgtatcatgtttcgtccatactttgcgtcttgcaggaatgacgtttaataatatttgccgatt 19176938  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 45164195 - 45164285
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||  |||||||||||| ||||||| |||| | |||||||||||||| ||||||    
T  45164195 tggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccataccttgcatcttgcggggataatgtttaataatatttgccgatt 45164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 40023308 - 40023225
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| ||| |||||| ||||| |||| |||||||  ||||||||||| |||||| ||||||||||||||    
T  40023308 tggtgtaccgtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcggggatgatgtttaataatattt 40023225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 50305313 - 50305230
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||||||  ||||||||| ||||| || | |||||||||||||||||||| | ||| |||||||||||||||    
T  50305313 tggtgtaccgtctatatgcgacaccatttgtatcttgttccgtccataccttgcgtcttgcgggaatggcgtttaataatattt 50305230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 31483222 - 31483312
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||  | |||||||||||||||| | |||||  |||||||||||||| ||||||    
T  31483222 tggtgtaccgtctatatgcagcaccatttgtatcttgttttgttcataccttgcgtcttgtggggatggtgtttaataatatttgccgatt 31483312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 34475497 - 34475407
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||| |||||||||||||  |||||||||| ||||| |||| | |||||| ||||||||||| ||||||||||||||||||| | ||||||    
T  34475497 tggtataccgtctatatggggcaccatttgtatcttgtttcgttcataccctgcgtcttgcggggatgacgtttaataatatgtgccgatt 34475407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 50559986 - 50560069
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||| ||||||||| ||| ||| | |||| ||||| |||| |||||| ||||||| |||||||||||||||||||||||||||    
T  50559986 tggtgcaccgtctatgtgcggcatcttttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtttaataatattt 50560069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 30352178 - 30352117
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcg 65  Q
    ||||||||| ||||||||| |||||||||| ||||| |||| ||||||||||||||||||||    
T  30352178 tggtgtaccttctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcg 30352117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 23328087 - 23328004
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||| ||||||| |||||||||  ||||| |||| |||||||||||||| ||||  ||||  |||||||||||||||    
T  23328087 tggtgtaccgtatatatgcggcaccatttatatcttgtttcgtccataccttgcgtattgcagggatagcgtttaataatattt 23328004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 45399127 - 45399210
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| ||||| |||| ||||| |||| | ||||||| ||||||| ||  |||| |||||||||||||||    
T  45399127 tggtgtaccgtctatatgcggcaccgtttgtatcttgtttcgttcatacctcgcgtctttcggagatgtcgtttaataatattt 45399210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 4463824 - 4463734
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||| ||||||||||||| ||||||||||  | || |||| |||||  ||||||||||| | || |||||||||||||||||| ||||||    
T  4463824 tggtgcaccgtctatatgcggcaccatttgtgtgttgtttcgtccatgtcttgcgtcttgtggggttgacgtttaataatatttgccgatt 4463734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 9583792 - 9583710
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatt 86  Q
    ||||||| ||||||||||| |||||||||| ||||| |||| || |||||||| ||||| ||  |||| ||||||||||||||    
T  9583792 tggtgtatcgtctatatgcggcaccatttgtatcttgtttcgtctataccttgtgtcttacggagatggcgtttaataatatt 9583710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 17551299 - 17551389
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||| |||||||||| |||||||||| || || |||| | |||||| ||| ||||||  |||| |||||||||||||||||| ||||    
T  17551299 tggtgtacagtctatatgcggcaccatttgtattttgtttcgttcataccctgcatcttgcagggataacgtttaataatatttactgatt 17551389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 43012719 - 43012796
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataa 82  Q
    ||||||| ||||||||||| |||||||||| || || |||| | ||||||||||||||||| |||||||| ||||||||    
T  43012719 tggtgtatcgtctatatgcggcaccatttgtatattgtttcgttcataccttgcgtcttgc-aggatgacatttaataa 43012796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 37158660 - 37158735
Alignment:
Q  16 tatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccga 92  Q
    ||||||| |||||||||| ||| | |||| |||||||||||||||||||| ||||| ||||| ||||||||| ||||    
T  37158660 tatatgcggcaccatttgtatcctgtttcgtccataccttgcgtcttgcggggatggcgttt-ataatatttgccga 37158735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 53248253 - 53248325
Alignment:
Q  15 ctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||  ||||||||| ||||| |||  |||||||||| || |||||| |||||||||||||||||||||    
T  53248253 ctatatgcgacaccatttgtatcttgttttgtccataccttacgccttgcggggatgacgtttaataatattt 53248325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 25506809 - 25506726
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| || || |||  |  ||| |||| |||||||| |||||| ||||||||||||||    
T  25506809 tggtgtaccgtctatatgcggcaccatttgtatattgttttgtttatatcttgggtcttgcggggatgatgtttaataatattt 25506726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 19260 - 19349
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgat 93  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  19260 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccatgcgtcttgcgaggatgacgtttaataatatttgccgat 19349  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 7703029 - 7703118
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  7703029 tggtgtaccgtctatatgcggcaccatttgtatctt-tttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccgatt 7703118  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 35329349 - 35329439
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||| ||||||||| ||||| |||||| |||||||| ||||||    
T  35329349 tggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttacgtcttgcggggatggcgtttactaatatttgccgatt 35329439  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 46698518 - 46698435
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| ||||| ||||  |||||||||||||||| |  |||||||||||||||||||||    
T  46698518 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatattt 46698435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 30167283 - 30167219
Alignment:
Q  23 tgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  30167283 tgcatcatttgtatcttgtttcgtccataccttgcgtcttgcgaggatgacgtttaataatattt 30167219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 2826123 - 2826206
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||| ||||||| |||||||||| ||||| || | |||||||||||||||||||   ||||||||||||||||||||    
T  2826123 tggtgtaccgtatatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtttaataatattt 2826206  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 27555670 - 27555579
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgc-gaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||| ||||||||| |||| ||||| ||||| |||| ||||||||||||||||||| | ||||| ||||||||||||||| ||||||    
T  27555670 tggtgtaccatctatatgcggcacaatttgtatcttgtttcgtccataccttgcgtcttgcgggggatggcgtttaataatatttgccgatt 27555579  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 4306047 - 4306136
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||  ||||| |||| | ||||||||||||||| || ||||||| ||||||||||||| ||||||    
T  4306047 tggtgtaccgtctatatgcggcaccatttatatctt-tttcgttcataccttgcgtcttccggggatgacatttaataatatttgccgatt 4306136  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 35341092 - 35341007
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgc--gaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||  |||||||||| ||||| |||| ||||||| |||||||||||  | |||||||||||||||||||||    
T  35341092 tggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatgacgtttaataatattt 35341007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 9750116 - 9750191
Alignment:
Q  11 ccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||| |||||||||| ||||| |||| |||| |||| |||||||||| |||||||||||||||||||||    
T  9750116 ccgtctatatgcggcaccatttgtatcttgtttcgtccaaacct-gcgtcttgcggggatgacgtttaataatattt 9750191  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 30964779 - 30964862
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||||||  || |||||| ||||| |||| |||||||||||||||||||  |||||  ||||||||||||||    
T  30964779 tggtgtaccgtctatatgcaacatcatttgtatcttgtttcgtccataccttgcgtcttgcagggatggtgtttaataatattt 30964862  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 8705879 - 8705789
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||| |   || ||||||||| ||||||||   ||||||||||||||||||||| ||||||    
T  8705879 tggtgtaccgtctatatgcagcaccatttgtatcctgcctcgtccatacctcgcgtcttgaagggatgacgtttaataatatttgccgatt 8705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 20464931 - 20465005
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgttta 78  Q
    ||||||||||||||||| | |||||||||| ||||| |||| | |||||||||| ||||| ||||||||||||||    
T  20464931 tggtgtaccgtctatatacggcaccatttgtatcttgtttctttcataccttgcatcttgtgaggatgacgttta 20465005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 31050400 - 31050317
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||||||  || |||||| ||||| |||| ||||||| | || ||||||| ||| |||||||||||||||||    
T  31050400 tggtgtaccgtctatatgcgacatcatttgtatcttgtttcgtccatacatcgcatcttgcggggacgacgtttaataatattt 31050317  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 49528425 - 49528479
Alignment:
Q  1 ttttggtgtaccgtctatatgctgcaccatttgcatcttatttcatccatacctt 55  Q
    |||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||    
T  49528425 ttttggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacctt 49528479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 36689542 - 36689461
Alignment:
Q  6 gtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||||   |||||||| |||||||||| ||||||||| ||||||||||  ||||   |||||||||||||    
T  36689542 gtgtaccgtctatatgcgataccatttgtatcttatttcgtccatacctcgcgtcttgcggagatggtatttaataatattt 36689461  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 52868851 - 52868767
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacg-tttaataatattt 87  Q
    |||||||||||||||| ||  ||||||||| |||||| ||| | |||||||| ||||||| || ||||||| |||||||||||||    
T  52868851 tggtgtaccgtctatacgcgacaccatttgtatcttaattcgttcataccttacgtcttgtgaagatgacgttttaataatattt 52868767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 11281464 - 11281375
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgat 93  Q
    |||| |||||||||||| | |||||||||  ||| | |||| |||||| ||||||||||| |  ||||||||| |||||||||| |||||    
T  11281464 tggtataccgtctatatacagcaccatttatatcatgtttcgtccatatcttgcgtcttgtggagatgacgttcaataatatttgccgat 11281375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 30685663 - 30685573
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||| ||||||||| |||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  30685663 tggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 46814204 - 46814114
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  46814204 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgcgaggatggcgtttaataatatttactgatt 46814114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 6804880 - 6804969
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  6804880 tggtgtaccgtctatatgcggcaccatttgtatctt-tttcgtccataccttgcgtcttgcggggatagcgtttaataatatttaccgatt 6804969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 40216242 - 40216162
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||| |||||||||| |||||  ||| |||||| || ||||||||||||||||||||||||||||||||    
T  40216242 tgtaccgtctatatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatattt 40216162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 24449669 - 24449587
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||||| ||||||| ||||| |||||||||||||||    
T  24449669 tggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcatcttgcg-ggatggcgtttaataatattt 24449587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 7002529 - 7002619
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||| ||||||| ||||| |||| ||||| |||| |||||||||| | | ||||||||||||||||||||||||||| ||||||    
T  7002529 tggtgtaccgtttatatgcggcaccttttgtatcttgtttcgtccataccttacattttgcgaggatgacgtttaataatatttgccgatt 7002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 31584778 - 31584689
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||| ||||||||||| |||||||||| ||||| |||| || |||||||||||||||||||||||  |||||||||||||| ||||||    
T  31584778 tggtgtatcgtctatatgcggcaccatttgtatcttgtttcgtc-ataccttgcgtcttgcgaggatggtgtttaataatatttgccgatt 31584689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 41920800 - 41920882
Alignment:
Q  5 ggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||||| |||| ||||| || ||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  41920800 ggtgtaccgtctatatgcagcacaatttgtattttatttcgtccataccttacgtcttgcggagatgacgtttaataatattt 41920882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 27031580 - 27031497
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||| ||||||| |||||||||  || || || | |||||| |||||||||||||||||||||||||||||||||||    
T  27031580 tggtgtaccgtatatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatattt 27031497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 14320665 - 14320755
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||||||||||||||  ||||||||| || |  |||  |||||||||||| ||||| | ||||||||||||||||||||| ||||||    
T  14320665 tggtgtaccgtctatatgcgacaccatttgtatttggttttgtccataccttgcatcttgtggggatgacgtttaataatatttgccgatt 14320755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 5389160 - 5389077
Alignment:
Q  6 gtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||| |||||||||||| |||||||||| |||||||||| ||||||||||||||     | ||||| ||||||||||||||| ||||||    
T  5389160 gtgtgccgtctatatgcggcaccatttgtatcttatttcgtccataccttgcgt-----ggggatggcgtttaataatattttccgatt 5389077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 24684231 - 24684142
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||  |||||||||| ||||| |||  | |||||||||| ||||||  ||||||| | ||||||||||| ||||||    
T  24684231 tggtgtaccgtctatatgtggcaccatttgtatcttgttt-gttcataccttgcatcttgcagggatgacatataataatatttgccgatt 24684142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 5459502 - 5459563
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcg 65  Q
    ||||||||||||||||||| |||||||||| || ||  ||| |||||||||||||| |||||    
T  5459502 tggtgtaccgtctatatgcggcaccatttgtatgttgcttcgtccataccttgcgtattgcg 5459563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 24659272 - 24659344
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| ||||| ||||           |||||||||| |||||||||||||||||||||    
T  24659272 tggtgtaccgtctatatgcggcaccatttgtatcttgtttc-----------gcgtcttgcggggatgacgtttaataatattt 24659344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 5254595 - 5254677
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  5254595 tggtgtaccgtctatatgcggcaccatttgtatct-atttcgtccataccttacgtcttgcgaggatgacgtttaataatattt 5254677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 14437006 - 14436923
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||||||| ||||| |||||||||||||||    
T  14437006 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatattt 14436923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 39338600 - 39338510
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| ||||||| ||||||||| ||| |||| ||||||||||||||| ||||||    
T  39338600 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacattgcgtcttacgatgatggcgtttaataatatttgccgatt 39338510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 10524440 - 10524529
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||| |||||||||||||||||||| || || |||| ||||||||||||||||||| ||| || ||||||||||||||| ||||||    
T  10524440 tggtgtaccatctatatgctgcaccatttgtatattgtttcgtccataccttgcgtcttgc-agggtggcgtttaataatatttgccgatt 10524529  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 387518 - 387599
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatat 85  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||||| |||| ||||||  ||||||||||||||||||    
T  387518 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccctgcgacttgcggtgatgacgtttaataatat 387599  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 3745686 - 3745773
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||| ||||||||| |||||||||| ||||| |||| |||||||||||||||||  | ||||||| ||||||||||||| ||||||    
T  3745686 tgtaccatctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgatt 3745773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 14106261 - 14106179
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||  ||||| |||| || ||||| ||||||||||||||||| |||||||||||||||    
T  14106261 tggtgtaccgtctatatgcggcaccatttctatcttgtttcgtc-ataccctgcgtcttgcgaggatggcgtttaataatattt 14106179  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 43248961 - 43248883
Alignment:
Q  9 taccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||| || ||||||  ||||| |||| ||||||||||| |||||| |||||||||||||||||||||||    
T  43248961 taccgtctatatgcggcgccatttatatcttgtttcgtccataccttgtgtcttgtgaggatgacgtttaataatattt 43248883  T

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Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 43816186 - 43816096
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| ||| |||||| |  || |||| |||||||||||||| ||||| | ||||||||||||||||||| ||||||    
T  43816186 tggtgtaccgtctatatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatatttgccgatt 43816096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 13512575 - 13512495
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||| ||| |||||| || || |||| ||||||| |||||||||||| | |||||||||||||||||||    
T  13512575 tgtaccgtctatatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatattt 13512495  T

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Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 17116625 - 17116553
Alignment:
Q  6 gtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgttta 78  Q
    ||||||||||||||||| ||| |||||| ||||| | || |||||||||||||||||||| ||||||||||||    
T  17116625 gtgtaccgtctatatgcggcatcatttgtatcttgtctcgtccataccttgcgtcttgcggggatgacgttta 17116553  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 7455601 - 7455683
Alignment:
Q  11 ccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||| ||| |||||||||| |||||||||| | ||||||| |||||||||| ||||||||||||||| ||||||| ||||    
T  7455601 ccgtctatttgcggcaccatttgtatcttatttcgttcatacct-gcgtcttgcggggatgacgtttaatattatttactgatt 7455683  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 7874618 - 7874702
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacg-tttaataatattt 87  Q
    ||||||||||||||||||| || ||||||| ||||| |||  || |||||||| |||||||||||||| || |||||||||||||    
T  7874618 tggtgtaccgtctatatgcggcgccatttgtatcttgttttgtctataccttgtgtcttgcgaggatggcgttttaataatattt 7874702  T

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Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 15457817 - 15457893
Alignment:
Q  17 atatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgat 93  Q
    |||||| |||||||||| ||||| |||| |||||| | ||||||||||| ||||||||||||||| ||||| |||||    
T  15457817 atatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgccgat 15457893  T

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Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 41877291 - 41877208
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||| | | |||||||| || || |||| |||||| ||||||||||||| |||||  ||||||||||||||    
T  41877291 tggtgtaccgtctatatacggtaccatttgtatattgtttcgtccatatcttgcgtcttgcggggatggagtttaataatattt 41877208  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 25281032 - 25280964
Alignment:
Q  26 accatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||  ||||| |||| |||||||| ||||||||| | ||||||||||||||||||||| ||||||    
T  25281032 accatttatatcttgtttcgtccataccctgcgtcttgtggggatgacgtttaataatattttccgatt 25280964  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 7461018 - 7461100
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||| ||||||||||  ||||||||| || || |||| || ||||  ||||||||||| |||||||||||||||||||||    
T  7461018 tggtgtactgtctatatgcaacaccatttgtattttgtttcgtc-atactctgcgtcttgcggggatgacgtttaataatattt 7461100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 14405541 - 14405623
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| |||||  ||| | |||||||| ||||||||  | || ||||||||||||||||    
T  14405541 tggtgtaccgtctatatgcagcaccatttgtatctt-gttcgttcataccttacgtcttgcaggaataacgtttaataatattt 14405623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 22888626 - 22888552
Alignment:
Q  9 taccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataata 84  Q
    |||||||||||||  |||||||||  | ||| |||||||||||| |||||||||||| ||||||| ||||||||||    
T  22888626 taccgtctatatgtggcaccatttctaccttgtttcatccatacattgcgtcttgcg-ggatgacatttaataata 22888552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 9823695 - 9823761
Alignment:
Q  28 catttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||| ||||| |||||| ||||||||| ||||||||  |||| ||||||||||||||| ||||||    
T  9823695 catttgtatcttgtttcattcataccttgtgtcttgcggagatggcgtttaataatatttgccgatt 9823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 45311543 - 45311461
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatt 86  Q
    |||||| |||| ||||||  |||||||||| ||||| |||| ||| | |||||| ||||||| || || ||||||||||||||    
T  45311543 tggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatatt 45311461  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 12898015 - 12897925
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| |||||| ||||| ||||||| ||||||||||||||||||||| ||||||    
T  12898015 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatcttgcatcttgcggggatgacgtttaataatatttgccgatt 12897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 20138768 - 20138858
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||| ||||||||| |||||||||| ||||| |||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  20138768 tggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccgatt 20138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 22773963 - 22774053
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||  |||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  22773963 tggtgtaccgtctatatgcggcaccatttgtatctagtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgatt 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 31207101 - 31207011
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||| ||||| | |||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  31207101 tggtgtaccgtttatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgaggatggcgtttaataatatttgccgatt 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 35815983 - 35815900
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||  |||||||||| ||||| |||| |||||||||||||| ||||||||||| |||||||||||||||    
T  35815983 tggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgcgaggatggcgtttaataatattt 35815900  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 32066022 - 32065934
Alignment:
Q  6 gtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||| |||||||||| ||||| |||| |||||||||||| |||||||  |||| ||||||||||||||| ||||||    
T  32066022 gtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcatcttgcggtgatggcgtttaataatatttgccgatt 32065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 15821115 - 15821033
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||| |||||||||||||| |||||||||| ||||| || | ||||||||||||||||||| ||||||||||||||||||||||    
T  15821115 tggtataccgtctatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgc-aggatgacgtttaataatattt 15821033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 16457214 - 16457131
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||  |||||||||| ||||| |||| |||||||||| ||||||||  |||||||||||||||||||||    
T  16457214 tggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttacgtcttgcagggatgacgtttaataatattt 16457131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 37986594 - 37986511
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| ||||| |||| ||| | |||||||||||||| ||||||| |||||||||||||    
T  37986594 tggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccgtgccttgcgtcttgcggggatgacatttaataatattt 37986511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 36631165 - 36631254
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||||||||||||| |||||||||| ||||| |||| | |||||||||||||||||  ||||| ||| ||||||||||| ||||||    
T  36631165 tggtgtaccgtctatatgcggcaccatttgtatcttgtttc-ttcataccttgcgtcttgcagggatggcgtataataatattttccgatt 36631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 9659475 - 9659534
Alignment:
Q  35 atcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  9659475 atcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 9659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 24995134 - 24995051
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||| ||||||| || |||||||||| ||||| |||| ||||||||||||||||| || ||||| |||| ||||||||||    
T  24995134 tggtgtactgtctataagcggcaccatttgtatcttgtttcgtccataccttgcgtcttacggggatggcgttcaataatattt 24995051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 35821597 - 35821685
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgat 93  Q
    ||||||||||||||||||| ||| |||||| ||| | |||| ||||| ||||||||||||||  |||| ||||||||||||||| |||||    
T  35821597 tggtgtaccgtctatatgcggcatcatttgtatcatgtttcgtccat-ccttgcgtcttgcggagatggcgtttaataatatttgccgat 35821685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 3584079 - 3584163
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatc-ttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| ||| || |||| | ||||||| |||||||| | ||||| |||||||||||||||    
T  3584079 tggtgtaccgtctatatgcggcaccatttgtatctttgtttcgttcatacctcgcgtcttgtggggatggcgtttaataatattt 3584163  T

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Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 9519851 - 9519931
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||| |||||||||| |||||||||| ||||| |||| ||||||||||||||||||   |||||  ||||||||||||||    
T  9519851 tgtactgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgtagggatggtgtttaataatattt 9519931  T

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Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 13538330 - 13538410
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||| | |||||||| || || |||| |||||||||||||||||| |  |||| |||||||||||||||    
T  13538330 tgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatattt 13538410  T

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Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 13686144 - 13686064
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||| | |||||||| || || |||| |||||||||||||||||| |  |||| |||||||||||||||    
T  13686144 tgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatattt 13686064  T

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Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 27889188 - 27889247
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttg 63  Q
    |||||||| |||||||||| |||||||||| ||||| |||| || |||||||||||||||    
T  27889188 tggtgtacagtctatatgcggcaccatttgtatcttgtttcgtcaataccttgcgtcttg 27889247  T

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Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 27947846 - 27947905
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttg 63  Q
    |||||||| |||||||||| |||||||||| ||||| |||| || |||||||||||||||    
T  27947846 tggtgtacagtctatatgcggcaccatttgtatcttgtttcgtcaataccttgcgtcttg 27947905  T

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Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 10837976 - 10837918
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtctt 62  Q
    ||||||||||||||||||| |||| |||||||||||||||  | ||| |||||||||||    
T  10837976 tggtgtaccgtctatatgcggcacgatttgcatcttattttgttcattccttgcgtctt 10837918  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 34866349 - 34866309
Alignment:
Q  54 ttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  34866349 ttgcgtcttgcggggatgacgtttaataatatttgccgatt 34866309  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 38577522 - 38577442
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||||||||| ||| |||||| || || |||| | ||||| || | |||||||   |||||||||||||||||||    
T  38577522 tgtaccgtctatatgcggcatcatttgtatattgtttcgttcatacattacatcttgcggaaatgacgtttaataatattt 38577442  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 3117836 - 3117919
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||||||  | |||||||||||||||||||    
T  3117836 tggtgtagcgtctatatgctgcaccatttgtatcttatttcgtccataccttacgtcttgcaggaatgacgtttaataatattt 3117919  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 3254299 - 3254389
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||||  ||||||| | |||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  3254299 tggtgtactatctatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 3254389  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 15944341 - 15944431
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    |||||||||||||||||||  ||||||||| ||||| ||   ||||||||||||||||| |  ||||| ||||||||||||||| ||||||    
T  15944341 tggtgtaccgtctatatgcgacaccatttgtatcttcttctgtccataccttgcgtcttacagggatggcgtttaataatatttgccgatt 15944431  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 15132573 - 15132496
Alignment:
Q  10 accgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||| | ||| |||||| ||||| |||  |||||||||| |||||||||| |||| |||||||||||||||    
T  15132573 accgtctatatacggcatcatttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatattt 15132496  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 10542173 - 10542262
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatatttaccgatt 94  Q
    ||||||| ||||||||||| ||||| |||| ||||| |||| | |||| ||||| ||||||| ||||| || |||||||||||| ||||||    
T  10542173 tggtgtatcgtctatatgcggcaccttttgtatcttgtttcgttcatatcttgcatcttgcg-ggatggcgcttaataatattttccgatt 10542262  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 33697836 - 33697789
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccata 51  Q
    ||||||||||||||||||| |||||||||| ||||| |||| ||||||    
T  33697836 tggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccata 33697789  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 14663438 - 14663478
Alignment:
Q  46 tccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  14663438 tccatacctttcgtcttgc-aggatgacgtttaataatattt 14663478  T

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Target: scaffold0085 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 48677 - 48760
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    ||||||||||||||||||| |||||||||| ||||| |||  |||||| |||| |||||||| ||| |||||| ||||||||||    
T  48677 tggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccatatcttgtgtcttgcggggaggacgttgaataatattt 48760  T

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Target: scaffold0343 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 6050 - 6130
Alignment:
Q  7 tgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttgcgaggatgacgtttaataatattt 87  Q
    |||| ||||||||| | |||||||||| ||||| | || | |||| ||||||||||||| |||||||||||||||||||||    
T  6050 tgtaacgtctatatacggcaccatttgtatcttgtctcgttcatatcttgcgtcttgcggggatgacgtttaataatattt 6130  T

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Target: scaffold0434 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 2412 - 2353
Alignment:
Q  4 tggtgtaccgtctatatgctgcaccatttgcatcttatttcatccataccttgcgtcttg 63  Q
    ||||||||||||||||||| ||||||| || ||||| |||| ||||||||||||||||||    
T  2412 tggtgtaccgtctatatgcggcaccatctgtatcttgtttcgtccataccttgcgtcttg 2353  T

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