View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18477_high_1 (Length: 519)
Name: NF18477_high_1
Description: NF18477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18477_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 116 - 385
Target Start/End: Complemental strand, 48787805 - 48787535
Alignment:
| Q |
116 |
gcaagcatgattgagttgtggtgtggcctttggactgcaactctgtatgttgcttagccttttttgttaatttgtttggcttatcgctttgtacttt-ct |
214 |
Q |
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| T |
48787805 |
gcaagcatgattgagttgtggtgtggcctttggactgcaactctgtatgttgcttagccttttttgttaatttgtttggcttatcgctttgtacttttct |
48787706 |
T |
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| Q |
215 |
agagtgctgcttgtcgagttgctctcatccttttaatgataatttcatttttcctagattggtgtggtccatgcttatataacagcgtgtaaaaggaaaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
48787705 |
agagtgctgcttgtcgagttgctctcatccttttaatgataatttcatttttcctagattggtgtggtccatgcttatataacagtgtgtaaaatgaaaa |
48787606 |
T |
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| Q |
315 |
ttcatatctaacaacacataattnnnnnnncaatatgatgtggacatcaatttataagtactgaaatacat |
385 |
Q |
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| T |
48787605 |
ttcatatctaacaacacataattaaaaaaacaatatgatgtggacatcaatttataagtactgaaatacat |
48787535 |
T |
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