View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18477_high_2 (Length: 360)

Name: NF18477_high_2
Description: NF18477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18477_high_2
NF18477_high_2
[»] scaffold1652 (5 HSPs)
scaffold1652 (17-346)||(358-684)
scaffold1652 (130-169)||(277-316)
scaffold1652 (297-346)||(199-248)
scaffold1652 (295-346)||(280-331)
scaffold1652 (131-181)||(343-393)
[»] scaffold0902 (3 HSPs)
scaffold0902 (17-346)||(3185-3517)
scaffold0902 (132-185)||(3483-3536)
scaffold0902 (130-181)||(3574-3625)
[»] scaffold1176 (4 HSPs)
scaffold1176 (17-346)||(139-465)
scaffold1176 (124-314)||(1288-1478)
scaffold1176 (130-181)||(124-175)
scaffold1176 (295-339)||(68-112)
[»] chr6 (6 HSPs)
chr6 (22-304)||(14253944-14254223)
chr6 (17-265)||(14248129-14248380)
chr6 (17-346)||(14316667-14316990)
chr6 (294-341)||(14248376-14248423)
chr6 (209-270)||(14351555-14351616)
chr6 (295-339)||(14248455-14248499)
[»] scaffold1801 (1 HSPs)
scaffold1801 (23-272)||(94-355)
[»] chr4 (10 HSPs)
chr4 (38-346)||(37244881-37245165)
chr4 (130-341)||(37241923-37242143)
chr4 (19-308)||(37232674-37232960)
chr4 (200-308)||(37253104-37253209)
chr4 (33-181)||(37257059-37257207)
chr4 (32-167)||(37241792-37241927)
chr4 (32-106)||(37252933-37253007)
chr4 (129-181)||(37245128-37245180)
chr4 (36-181)||(37237606-37237751)
chr4 (129-181)||(37242111-37242163)
[»] scaffold0002 (2 HSPs)
scaffold0002 (294-341)||(165303-165350)
scaffold0002 (295-339)||(165227-165271)


Alignment Details
Target: scaffold1652 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 684 - 358
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  684 aaaataaactctgcgtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggtggcagc 585  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagag 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  584 gtttgtggacgttgatggtgctttagatggtggggtagagatcgccgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagag 485  T
Q  217 ttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| |||||     
T  484 ttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgc---caccgttgagttagcggagggagaaatcgcaggctatggtg 388  T
Q  317 cttgagatggaagagtagagatcgatgatg 346  Q
    ||||||||||| ||||||| ||||| ||||    
T  387 cttgagatggaggagtagatatcgacgatg 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 316 - 277
Alignment:
Q  130 gatggtgctttagatggaggggtagagatcgacgatggag 169  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  316 gatggtgcttgagatggaggggtagagatcgacgatggag 277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 248 - 199
Alignment:
Q  297 agaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatg 346  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||| ||||    
T  248 agaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatg 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 331 - 280
Alignment:
Q  295 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatg 346  Q
    |||||||||| |||||||||| ||||||||||| | ||||||||||| ||||    
T  331 ggagaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgatg 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 393 - 343
Alignment:
Q  131 atggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    ||||||||| ||||||||| ||||| |||||||||||||| | ||||||||    
T  393 atggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggag 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 3185 - 3517
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||    
T  3185 aaaataaactcagcctaactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggtgccagc 3284  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagctt---gaggagatggtgga 213  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||| |   ||||||||||||||    
T  3285 gtttgtgaatgttgatggtgctttagatggaggggtagagatcgccgatggagtaatggcaggagcggctgctggggaagcatgaggaggagatggtgga 3384  T
Q  214 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| ||    
T  3385 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatatagatgccattgagttagcggagggagaaatcgcaggcgttg 3484  T
Q  314 gtccttgagatggaagagtagagatcgatgatg 346  Q
    || ||||||||||| ||||||||||||| ||||    
T  3485 gtgcttgagatggaggagtagagatcgacgatg 3517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 3483 - 3536
Alignment:
Q  132 tggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggc 185  Q
    |||||||| ||||||||| |||||||||||||||||||| | ||||||||||||    
T  3483 tggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagtggc 3536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 3574 - 3625
Alignment:
Q  130 gatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    |||||||||| || ||||||| ||||||||||||||||||| | ||||||||    
T  3574 gatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggag 3625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 465 - 139
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |    
T  465 aaaagaaactcagcctaactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcgtc 366  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagag 216  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||    
T  365 gtttgtggacgttgatggtgctttagatggaggggtagagatggacgatggagtaatagcaggggtggctgcgggggaagcttgaggagatggtctagag 266  T
Q  217 ttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtc 316  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||    || ||||||||||| ||||||||||||||||||||||||     
T  265 ttgatggcagatggtgaaggagaaggactgctcttcacaggttcaggagcagacgc---cgcggttgagttagctgagggagaaatcgcaggcgatggtg 169  T
Q  317 cttgagatggaagagtagagatcgatgatg 346  Q
    ||||||||||| ||||||||||||||||||    
T  168 cttgagatggaggagtagagatcgatgatg 139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 314
Target Start/End: Complemental strand, 1478 - 1288
Alignment:
Q  124 gacgttgatggtgctttagatggagggg-tagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggag---atggtggagagttg 219  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||| |||| |||| ||||  | |||||||||||| |||||||   |||||||| |||||    
T  1478 gacgttgattgtgctttagatggagggggtagagattgacgatg-agtattagccggagctgttgcgggggaagcatgaggaggagatggtggacagttg 1380  T
Q  220 atggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatgg 314  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||||| ||||    |||||||||||||| ||||||||||||||||| |||||    
T  1379 atggcacacggtgaaggagaaggactgctcttcacaggtacacgagcatatgc---cgccgttgagttagctgagggagaaatcgcaggagatgg 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 175 - 124
Alignment:
Q  130 gatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    |||||||||| ||||||||| ||||||||||| |||||||| | ||||||||    
T  175 gatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggag 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 112 - 68
Alignment:
Q  295 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 339  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  112 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 14253944 - 14254223
Alignment:
Q  22 aaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttg 121  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |   |||||    
T  14253944 aaactcagtctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtc---gtttg 14254040  T
Q  122 tggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagagttgat 221  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  14254041 tggacgttgatggtactttagatggagggatagagatcgacgatggagtaatagcaggagtagctgcaggtgaagcttgaggagatggtggagagttgat 14254140  T
Q  222 ggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  14254141 ggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgaagatgccgttgagctagcggagggagaaatcg 14254223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 14248129 - 14248380
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    |||| ||||| ||||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||    
T  14248129 aaaaaaaactaagcctaactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcggc 14248228  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagctt---gaggagatggtgga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||   ||||||||| ||||    
T  14248229 gtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcttgaggaggagatgatgga 14248328  T
Q  214 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggag 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14248329 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtatgggag 14248380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 14316667 - 14316990
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||   |||||  |    
T  14316667 aaaaaaaactaagcctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaa---gcggcgtc 14316763  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagctt---gaggagatggtgga 213  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||||||||||||||||||||||   ||||||||| ||||    
T  14316764 gttcgtggacgttgatggtgctttagaaggaggggtagagatcgatgatggagtgatggccggagtggctgcgggggaagcttgaggaggagatgatgga 14316863  T
Q  214 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatg 313  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||      |||||||| ||||||||||| || || |||||||||||||| |    
T  14316864 gagttgatggcagacggtgaaatagaaggactgctcttcacaggtacggga------gcagatgctgttgagttagctgatggggaaatcgcaggcgagg 14316957  T
Q  314 gtccttgagatggaagagtagagatcgatgatg 346  Q
    || ||||||| ||| ||||||||||||||||||    
T  14316958 gtgcttgagacggaggagtagagatcgatgatg 14316990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 14248376 - 14248423
Alignment:
Q  294 gggagaaatcgcaggcgatggtccttgagatggaagagtagagatcga 341  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  14248376 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcga 14248423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 14351555 - 14351616
Alignment:
Q  209 gtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagat 270  Q
    |||||||||||||||  || | ||||||||||||||| ||||| ||||||| ||||| ||||    
T  14351555 gtggagagttgatggtggatgatgaaggagaaggactactctttacaggtatgggagaagat 14351616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 14248455 - 14248499
Alignment:
Q  295 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 339  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  14248455 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 14248499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 355 - 94
Alignment:
Q  23 aactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgt 122  Q
    |||||||||||| ||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  355 aactcagcctaaatctttacatcatcaaagcagcagttaaaaggacgacagcagcagatccggcaactgtaaatctgttcaaagcggcagcagcgtttgt 256  T
Q  123 ggacgt---------tgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggag---atggt 210  Q
    ||| ||         ||||| ||||||||||||||||||||||||||||||||||||||| |||||||  ||||| || ||||| |||||||   || ||    
T  255 ggatgtctgtgatgttgatgatgctttagatggaggggtagagatcgacgatggagtaatggcaggagcagctgctggcgaagcatgaggaggagattgt 156  T
Q  211 ggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  155 ggagagttgatggcagacggtgaaggagaaggactgctcttcacaggaacaggagcagatgc 94  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 38 - 346
Target Start/End: Original strand, 37244881 - 37245165
Alignment:
Q  38 tctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgtggacgttgatggtgc 137  Q
    |||| ||||||||| |||||| ||||||||| |||||||||||||||||||| || |||||||| |||| |||| |   ||||||||| ||||||||||     
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgcc---gtttgtggatgttgatggtga 37244977  T
Q  138 tttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagagttgatggcagacggtgaagga 237  Q
    ||||||||||||||||||||| |||| |||||||||||||||||                  |||||||||||||||||||| |||  |||||||| |||    
T  37244978 tttagatggaggggtagagatagacgttggagtaatagcaggag------------------gaggagatggtggagagttgttggtggacggtgatgga 37245059  T
Q  238 gaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtccttgagatggaagagtagaga 337  Q
    |||||| |||||||| |||| |||||||||||||| |   |||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||    
T  37245060 gaaggaatgctcttcgcaggcacgggagcagatgccg---ccgttgagttagcggagggagaaatcgctggtgatggtgcttgagatggaggagtagaga 37245156  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 130 - 341
Target Start/End: Original strand, 37241923 - 37242143
Alignment:
Q  130 gatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgagg------agatggtggagagttgatgg 223  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||| || ||||| || |||||      ||||||||||||||||||||    
T  37241923 gatggtgctttagttggaggagtagagattgacgatggagtaatagcaggagcggcagcaggggaggcgtgaggaggaggagatggtggagagttgatgg 37242022  T
Q  224 cagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagc------ggagggagaaatcgcaggcgatggtcc 317  Q
    | |||||||||||||||||||||||| | ||||||||||||| ||||||     ||| |||||||||      |||||||| ||||||||| |||||| |    
T  37242023 cggacggtgaaggagaaggactgctcgttacaggtacgggagaagatgc---caccggtgagttagcgctggtggagggagcaatcgcaggtgatggtgc 37242119  T
Q  318 ttgagatggaagagtagagatcga 341  Q
    |||||||||| |||| ||||||||    
T  37242120 ttgagatggaggagttgagatcga 37242143  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 37232674 - 37232960
Alignment:
Q  19 aataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgt 118  Q
    |||||||| ||  |||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| || ||||| ||||||   |||||  |||    
T  37232674 aataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaa---gcggcgccgt 37232770  T
Q  119 ttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcggg---------ggaagc---ttgaggaga 206  Q
             |||||||||||| ||  ||||| || |||||||| |||||||||| |||||||| ||| |||||         ||||||     |||||||    
T  37232771 ---------ttgatggtgcttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggcggcgggtgaaccagaggaagcaggaggaggaga 37232861  T
Q  207 tggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgca 306  Q
    |||||||||||||||||| || || |||||||| |||    ||||||||||| |||||| |||||||   |||| ||||| |||||||||||| ||||||    
T  37232862 tggtggagagttgatggcggatggcgaaggagatggagaattcttcacaggtgcgggaggagatgca---gccggtgagtgagcggagggagagatcgca 37232958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 37253104 - 37253209
Alignment:
Q  200 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggaga 299  Q
    ||||||||||||||||||||||||| || ||||||||||| |||  | |||||||||||| ||||||||||||    |||| ||||| ||||||||||||    
T  37253104 gaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtatgggagcagatgc---cgccggtgagtcagcggagggaga 37253200  T
Q  300 aatcgcagg 308  Q
     ||||||||    
T  37253201 gatcgcagg 37253209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 37257059 - 37257207
Alignment:
Q  33 aactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgtggacgttgat 132  Q
    |||||||||||||||||||||||| | ||||||||  |||||||||||||| ||||| || |||||||| |||| |||||| | |||    || | |||     
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  133 ggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    ||||||| ||| ||||  |||||||| || |||||||||| ||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggag 37257207  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 37241792 - 37241927
Alignment:
Q  32 taactctctacatca---tcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgtggacgt 128  Q
    |||||||||||||||   ||||||| ||| | ||||| ||  |||||||| ||||||||||  | ||||  |||| ||||||   | ||||||||| |||    
T  37241792 taactctctacatcaatatcaaagccgcaataaaaacgacagcagcagcatatccggcaacgttgaatccattcatagtggc---accgtttgtgggcgt 37241888  T
Q  129 tgatggtgctttagatggaggggtagagatcgacgatgg 167  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  37241889 tgatggtgctttagttggaggagtagagatcgacgatgg 37241927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 37252933 - 37253007
Alignment:
Q  32 taactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 106  Q
    |||||||||| |  |||||||| || | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  37252933 taactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaag 37253007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 37245128 - 37245180
Alignment:
Q  129 tgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    ||||||||||| ||||||||| |||||||||||||||||||| | ||||||||    
T  37245128 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 37245180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 37237606 - 37237751
Alignment:
Q  36 tctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgtggacgttgatggt 135  Q
    |||||||||||||||||| ||||  ||||| ||  ||||||||||| ||||||  || ||||||||||| | ||||   | |||    || | ||| |||    
T  37237606 tctctacatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcgatggagttatcagaaggtgaaggt 37237705  T
Q  136 gctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    |||| ||| ||||| |||||||| || |||||||||| ||||||||    
T  37237706 gcttcagaaggaggagtagagatggatgatggagtaacagcaggag 37237751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 37242111 - 37242163
Alignment:
Q  129 tgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    ||||||||||| ||||||||| || ||||||||| |||||||||  |||||||    
T  37242111 tgatggtgcttgagatggaggagttgagatcgacaatggagtaactgcaggag 37242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 165350 - 165303
Alignment:
Q  294 gggagaaatcgcaggcgatggtccttgagatggaagagtagagatcga 341  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  165350 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcga 165303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 165271 - 165227
Alignment:
Q  295 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 339  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  165271 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 165227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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