View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18477_high_3 (Length: 341)
Name: NF18477_high_3
Description: NF18477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18477_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 48594046 - 48593714
Alignment:
| Q |
1 |
ggaagatcaaatagcaaaactatgagaaaattaaaacaatcaccctgcattgcaggcgatatcctgttactgcttctctctacataatacaacatttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48594046 |
ggaagatcaaatagcaaaactatgagaaaattaaaacaattaccctgcattgcaggcgatatcctgttacagcttctctctacataatacaacatttcct |
48593947 |
T |
|
| Q |
101 |
acccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatctaatatcacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48593946 |
acccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatctagtatcacata |
48593847 |
T |
|
| Q |
201 |
atataactccgtacctccgttgacatttatagagacccttatacttgg------tattctttcaagaaagctataatttcttgttcttataccttgttat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48593846 |
atataactccgtacctccgttgacatttatagagacccttatacttggtttgcatattctttcaagaaacctataatttcttgttcttataccttgttat |
48593747 |
T |
|
| Q |
295 |
tacattaataaagtaaggaatttccttatattt |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
48593746 |
tacattaataaagtaaggaatttccttatattt |
48593714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University