View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18477_high_6 (Length: 237)
Name: NF18477_high_6
Description: NF18477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18477_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6338133 - 6337912
Alignment:
| Q |
1 |
ctcttaaaaaccataaacagtcggttcgggcaatggttccacatcctacggagtatgtgttcagtatcagttgattgttacttgtagaatgattggctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6338133 |
ctcttaaaaaccataaacagtcggttcgggcaatggttccacatcctacggagtatgtgttcagtatcagttgattgttacttgtagaatgattggctta |
6338034 |
T |
|
| Q |
101 |
tttttatatttaaatctgttatttcatt-ttttcttctccgtctcacactctcactccttcttatttgttggctgcaggcaagcttttgcatctgcatcg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6338033 |
tttttatatttaaatctgttatttcatttttttcttctccgtctcacactctcactccttcttatttgttggctgcatgcaagcttttgcatctgcatcg |
6337934 |
T |
|
| Q |
200 |
gctgataatattaaaaagttca |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
6337933 |
gctgataatattaaaaagttca |
6337912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 14192587 - 14192524
Alignment:
| Q |
158 |
ttcttatttgttggctgcaggcaagcttttgcatctgcatcggctgataatattaaaaagttca |
221 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14192587 |
ttcttctttgttggctgcaggcaagcttttgcatctgcatcagctgataatattaaaaagttca |
14192524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 14192758 - 14192665
Alignment:
| Q |
1 |
ctcttaaaaaccataaacagtcggttcgggcaatggttccacatcctacggagtatgtgttcagtatcagttgattgttacttgtagaatgatt |
94 |
Q |
| |
|
|||||| |||||||||| |||| ||||| ||||||| || ||||||| ||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
14192758 |
ctcttacaaaccataaaaagtctgttcgagcaatggctcagcatcctaaagagtatgtgttcaatatcagttgattgttacttgtagaacgatt |
14192665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University