View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18477_low_2 (Length: 360)

Name: NF18477_low_2
Description: NF18477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18477_low_2
NF18477_low_2
[»] scaffold1652 (5 HSPs)
scaffold1652 (17-346)||(358-684)
scaffold1652 (130-169)||(277-316)
scaffold1652 (297-346)||(199-248)
scaffold1652 (295-346)||(280-331)
scaffold1652 (131-181)||(343-393)
[»] scaffold0902 (3 HSPs)
scaffold0902 (17-346)||(3185-3517)
scaffold0902 (132-185)||(3483-3536)
scaffold0902 (130-181)||(3574-3625)
[»] scaffold1176 (4 HSPs)
scaffold1176 (17-346)||(139-465)
scaffold1176 (124-314)||(1288-1478)
scaffold1176 (130-181)||(124-175)
scaffold1176 (295-339)||(68-112)
[»] chr6 (6 HSPs)
chr6 (22-304)||(14253944-14254223)
chr6 (17-265)||(14248129-14248380)
chr6 (17-346)||(14316667-14316990)
chr6 (294-341)||(14248376-14248423)
chr6 (209-270)||(14351555-14351616)
chr6 (295-339)||(14248455-14248499)
[»] scaffold1801 (1 HSPs)
scaffold1801 (23-272)||(94-355)
[»] chr4 (10 HSPs)
chr4 (38-346)||(37244881-37245165)
chr4 (130-341)||(37241923-37242143)
chr4 (19-308)||(37232674-37232960)
chr4 (200-308)||(37253104-37253209)
chr4 (33-181)||(37257059-37257207)
chr4 (32-167)||(37241792-37241927)
chr4 (32-106)||(37252933-37253007)
chr4 (129-181)||(37245128-37245180)
chr4 (36-181)||(37237606-37237751)
chr4 (129-181)||(37242111-37242163)
[»] scaffold0002 (2 HSPs)
scaffold0002 (294-341)||(165303-165350)
scaffold0002 (295-339)||(165227-165271)


Alignment Details
Target: scaffold1652 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 684 - 358
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  684 aaaataaactctgcgtaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggtggcagc 585  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagag 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  584 gtttgtggacgttgatggtgctttagatggtggggtagagatcgccgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagag 485  T
Q  217 ttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| |||||     
T  484 ttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgc---caccgttgagttagcggagggagaaatcgcaggctatggtg 388  T
Q  317 cttgagatggaagagtagagatcgatgatg 346  Q
    ||||||||||| ||||||| ||||| ||||    
T  387 cttgagatggaggagtagatatcgacgatg 358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 316 - 277
Alignment:
Q  130 gatggtgctttagatggaggggtagagatcgacgatggag 169  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  316 gatggtgcttgagatggaggggtagagatcgacgatggag 277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 248 - 199
Alignment:
Q  297 agaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatg 346  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||| ||||    
T  248 agaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatg 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 331 - 280
Alignment:
Q  295 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatcgatgatg 346  Q
    |||||||||| |||||||||| ||||||||||| | ||||||||||| ||||    
T  331 ggagaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgatg 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 393 - 343
Alignment:
Q  131 atggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    ||||||||| ||||||||| ||||| |||||||||||||| | ||||||||    
T  393 atggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggag 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 3185 - 3517
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||    
T  3185 aaaataaactcagcctaactctctacatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcggtgccagc 3284  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagctt---gaggagatggtgga 213  Q
    ||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||| |   ||||||||||||||    
T  3285 gtttgtgaatgttgatggtgctttagatggaggggtagagatcgccgatggagtaatggcaggagcggctgctggggaagcatgaggaggagatggtgga 3384  T
Q  214 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| ||    
T  3385 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatatagatgccattgagttagcggagggagaaatcgcaggcgttg 3484  T
Q  314 gtccttgagatggaagagtagagatcgatgatg 346  Q
    || ||||||||||| ||||||||||||| ||||    
T  3485 gtgcttgagatggaggagtagagatcgacgatg 3517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 3483 - 3536
Alignment:
Q  132 tggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggc 185  Q
    |||||||| ||||||||| |||||||||||||||||||| | ||||||||||||    
T  3483 tggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagtggc 3536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 3574 - 3625
Alignment:
Q  130 gatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    |||||||||| || ||||||| ||||||||||||||||||| | ||||||||    
T  3574 gatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggag 3625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 465 - 139
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |    
T  465 aaaagaaactcagcctaactctctacatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcgtc 366  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagag 216  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||    
T  365 gtttgtggacgttgatggtgctttagatggaggggtagagatggacgatggagtaatagcaggggtggctgcgggggaagcttgaggagatggtctagag 266  T
Q  217 ttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtc 316  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||    || ||||||||||| ||||||||||||||||||||||||     
T  265 ttgatggcagatggtgaaggagaaggactgctcttcacaggttcaggagcagacgc---cgcggttgagttagctgagggagaaatcgcaggcgatggtg 169  T
Q  317 cttgagatggaagagtagagatcgatgatg 346  Q
    ||||||||||| ||||||||||||||||||    
T  168 cttgagatggaggagtagagatcgatgatg 139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 314
Target Start/End: Complemental strand, 1478 - 1288
Alignment:
Q  124 gacgttgatggtgctttagatggagggg-tagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggag---atggtggagagttg 219  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||| |||| |||| ||||  | |||||||||||| |||||||   |||||||| |||||    
T  1478 gacgttgattgtgctttagatggagggggtagagattgacgatg-agtattagccggagctgttgcgggggaagcatgaggaggagatggtggacagttg 1380  T
Q  220 atggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatgg 314  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||||| ||||    |||||||||||||| ||||||||||||||||| |||||    
T  1379 atggcacacggtgaaggagaaggactgctcttcacaggtacacgagcatatgc---cgccgttgagttagctgagggagaaatcgcaggagatgg 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 175 - 124
Alignment:
Q  130 gatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    |||||||||| ||||||||| ||||||||||| |||||||| | ||||||||    
T  175 gatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggag 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 112 - 68
Alignment:
Q  295 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 339  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  112 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 22 - 304
Target Start/End: Original strand, 14253944 - 14254223
Alignment:
Q  22 aaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttg 121  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |   |||||    
T  14253944 aaactcagtctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcgtc---gtttg 14254040  T
Q  122 tggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagagttgat 221  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||    
T  14254041 tggacgttgatggtactttagatggagggatagagatcgacgatggagtaatagcaggagtagctgcaggtgaagcttgaggagatggtggagagttgat 14254140  T
Q  222 ggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  14254141 ggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgaagatgccgttgagctagcggagggagaaatcg 14254223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 14248129 - 14248380
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    |||| ||||| ||||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||    
T  14248129 aaaaaaaactaagcctaactctctacatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcggc 14248228  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagctt---gaggagatggtgga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||   ||||||||| ||||    
T  14248229 gtttgtggacgttgatggtgctttagatggaggggtagagatcgccgatggagtaattgcaggagtggctgcggggaaagcttgaggaggagatgatgga 14248328  T
Q  214 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggag 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14248329 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtatgggag 14248380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 14316667 - 14316990
Alignment:
Q  17 aaaataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagc 116  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||   |||||  |    
T  14316667 aaaaaaaactaagcctaactctctacatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaa---gcggcgtc 14316763  T
Q  117 gtttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagctt---gaggagatggtgga 213  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||||||||||||||||||||||   ||||||||| ||||    
T  14316764 gttcgtggacgttgatggtgctttagaaggaggggtagagatcgatgatggagtgatggccggagtggctgcgggggaagcttgaggaggagatgatgga 14316863  T
Q  214 gagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatg 313  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||      |||||||| ||||||||||| || || |||||||||||||| |    
T  14316864 gagttgatggcagacggtgaaatagaaggactgctcttcacaggtacggga------gcagatgctgttgagttagctgatggggaaatcgcaggcgagg 14316957  T
Q  314 gtccttgagatggaagagtagagatcgatgatg 346  Q
    || ||||||| ||| ||||||||||||||||||    
T  14316958 gtgcttgagacggaggagtagagatcgatgatg 14316990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 14248376 - 14248423
Alignment:
Q  294 gggagaaatcgcaggcgatggtccttgagatggaagagtagagatcga 341  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  14248376 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcga 14248423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 14351555 - 14351616
Alignment:
Q  209 gtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagat 270  Q
    |||||||||||||||  || | ||||||||||||||| ||||| ||||||| ||||| ||||    
T  14351555 gtggagagttgatggtggatgatgaaggagaaggactactctttacaggtatgggagaagat 14351616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 14248455 - 14248499
Alignment:
Q  295 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 339  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  14248455 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 14248499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 355 - 94
Alignment:
Q  23 aactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgt 122  Q
    |||||||||||| ||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  355 aactcagcctaaatctttacatcatcaaagcagcagttaaaaggacgacagcagcagatccggcaactgtaaatctgttcaaagcggcagcagcgtttgt 256  T
Q  123 ggacgt---------tgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggag---atggt 210  Q
    ||| ||         ||||| ||||||||||||||||||||||||||||||||||||||| |||||||  ||||| || ||||| |||||||   || ||    
T  255 ggatgtctgtgatgttgatgatgctttagatggaggggtagagatcgacgatggagtaatggcaggagcagctgctggcgaagcatgaggaggagattgt 156  T
Q  211 ggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  155 ggagagttgatggcagacggtgaaggagaaggactgctcttcacaggaacaggagcagatgc 94  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 38 - 346
Target Start/End: Original strand, 37244881 - 37245165
Alignment:
Q  38 tctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgtggacgttgatggtgc 137  Q
    |||| ||||||||| |||||| ||||||||| |||||||||||||||||||| || |||||||| |||| |||| |   ||||||||| ||||||||||     
T  37244881 tctatatcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcgcc---gtttgtggatgttgatggtga 37244977  T
Q  138 tttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgaggagatggtggagagttgatggcagacggtgaagga 237  Q
    ||||||||||||||||||||| |||| |||||||||||||||||                  |||||||||||||||||||| |||  |||||||| |||    
T  37244978 tttagatggaggggtagagatagacgttggagtaatagcaggag------------------gaggagatggtggagagttgttggtggacggtgatgga 37245059  T
Q  238 gaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgcaggcgatggtccttgagatggaagagtagaga 337  Q
    |||||| |||||||| |||| |||||||||||||| |   |||||||||||||||||||||||||||| || |||||| ||||||||||| |||||||||    
T  37245060 gaaggaatgctcttcgcaggcacgggagcagatgccg---ccgttgagttagcggagggagaaatcgctggtgatggtgcttgagatggaggagtagaga 37245156  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 130 - 341
Target Start/End: Original strand, 37241923 - 37242143
Alignment:
Q  130 gatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcgggggaagcttgagg------agatggtggagagttgatgg 223  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||| || ||||| || |||||      ||||||||||||||||||||    
T  37241923 gatggtgctttagttggaggagtagagattgacgatggagtaatagcaggagcggcagcaggggaggcgtgaggaggaggagatggtggagagttgatgg 37242022  T
Q  224 cagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagc------ggagggagaaatcgcaggcgatggtcc 317  Q
    | |||||||||||||||||||||||| | ||||||||||||| ||||||     ||| |||||||||      |||||||| ||||||||| |||||| |    
T  37242023 cggacggtgaaggagaaggactgctcgttacaggtacgggagaagatgc---caccggtgagttagcgctggtggagggagcaatcgcaggtgatggtgc 37242119  T
Q  318 ttgagatggaagagtagagatcga 341  Q
    |||||||||| |||| ||||||||    
T  37242120 ttgagatggaggagttgagatcga 37242143  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 37232674 - 37232960
Alignment:
Q  19 aataaactcagcctaactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgt 118  Q
    |||||||| ||  |||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||| || ||||| ||||||   |||||  |||    
T  37232674 aataaactaagagtaactctctacatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaa---gcggcgccgt 37232770  T
Q  119 ttgtggacgttgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggagtggctgcggg---------ggaagc---ttgaggaga 206  Q
             |||||||||||| ||  ||||| || |||||||| |||||||||| |||||||| ||| |||||         ||||||     |||||||    
T  37232771 ---------ttgatggtgcttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggcggcgggtgaaccagaggaagcaggaggaggaga 37232861  T
Q  207 tggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggagaaatcgca 306  Q
    |||||||||||||||||| || || |||||||| |||    ||||||||||| |||||| |||||||   |||| ||||| |||||||||||| ||||||    
T  37232862 tggtggagagttgatggcggatggcgaaggagatggagaattcttcacaggtgcgggaggagatgca---gccggtgagtgagcggagggagagatcgca 37232958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 308
Target Start/End: Original strand, 37253104 - 37253209
Alignment:
Q  200 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgcagatgccgttgagttagcggagggaga 299  Q
    ||||||||||||||||||||||||| || ||||||||||| |||  | |||||||||||| ||||||||||||    |||| ||||| ||||||||||||    
T  37253104 gaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtatgggagcagatgc---cgccggtgagtcagcggagggaga 37253200  T
Q  300 aatcgcagg 308  Q
     ||||||||    
T  37253201 gatcgcagg 37253209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 37257059 - 37257207
Alignment:
Q  33 aactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgtggacgttgat 132  Q
    |||||||||||||||||||||||| | ||||||||  |||||||||||||| ||||| || |||||||| |||| |||||| | |||    || | |||     
T  37257059 aactctctacatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaa 37257158  T
Q  133 ggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    ||||||| ||| ||||  |||||||| || |||||||||| ||||||||    
T  37257159 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggag 37257207  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 167
Target Start/End: Original strand, 37241792 - 37241927
Alignment:
Q  32 taactctctacatca---tcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgtggacgt 128  Q
    |||||||||||||||   ||||||| ||| | ||||| ||  |||||||| ||||||||||  | ||||  |||| ||||||   | ||||||||| |||    
T  37241792 taactctctacatcaatatcaaagccgcaataaaaacgacagcagcagcatatccggcaacgttgaatccattcatagtggc---accgtttgtgggcgt 37241888  T
Q  129 tgatggtgctttagatggaggggtagagatcgacgatgg 167  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  37241889 tgatggtgctttagttggaggagtagagatcgacgatgg 37241927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 37252933 - 37253007
Alignment:
Q  32 taactctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 106  Q
    |||||||||| |  |||||||| || | ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  37252933 taactctctatagtatcaaagcggcggcgaaaaccactacagcagcagatccggcaacggtaaatctgttcaaag 37253007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 37245128 - 37245180
Alignment:
Q  129 tgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    ||||||||||| ||||||||| |||||||||||||||||||| | ||||||||    
T  37245128 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 37245180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 37237606 - 37237751
Alignment:
Q  36 tctctacatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagtggcggcagcgtttgtggacgttgatggt 135  Q
    |||||||||||||||||| ||||  ||||| ||  ||||||||||| ||||||  || ||||||||||| | ||||   | |||    || | ||| |||    
T  37237606 tctctacatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcgatggagttatcagaaggtgaaggt 37237705  T
Q  136 gctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    |||| ||| ||||| |||||||| || |||||||||| ||||||||    
T  37237706 gcttcagaaggaggagtagagatggatgatggagtaacagcaggag 37237751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 37242111 - 37242163
Alignment:
Q  129 tgatggtgctttagatggaggggtagagatcgacgatggagtaatagcaggag 181  Q
    ||||||||||| ||||||||| || ||||||||| |||||||||  |||||||    
T  37242111 tgatggtgcttgagatggaggagttgagatcgacaatggagtaactgcaggag 37242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 165350 - 165303
Alignment:
Q  294 gggagaaatcgcaggcgatggtccttgagatggaagagtagagatcga 341  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  165350 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcga 165303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 165271 - 165227
Alignment:
Q  295 ggagaaatcgcaggcgatggtccttgagatggaagagtagagatc 339  Q
    |||||||| | |||||||||||||||||||||| | |||||||||    
T  165271 ggagaaatagtaggcgatggtccttgagatggaggggtagagatc 165227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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