View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18478_high_12 (Length: 241)
Name: NF18478_high_12
Description: NF18478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18478_high_12 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 33732213 - 33732334
Alignment:
| Q |
15 |
caaaggaaacagacaaagcaaaaacaagaaattttaattaaaataaaaatgcaagtacaagagttctttgatgataagtcaaaccaaaccaagaccaaac |
114 |
Q |
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| T |
33732213 |
caaaggaaacagacaaagcaaaaacaagaaattttaattaaaataaaaatgcaagtacaagagttctttgatgataagtcaaaccaaaccaagaccaaac |
33732312 |
T |
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| Q |
115 |
ttaagactatcattcatacaat |
136 |
Q |
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| T |
33732313 |
ttgagactatcattcatacaat |
33732334 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 33732341 - 33732377
Alignment:
| Q |
187 |
ctacgatcatagccacccactacggctggtcgtaaca |
223 |
Q |
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| T |
33732341 |
ctacgatcatagccacccactacggctggtcgtaaca |
33732377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 121373 - 121421
Alignment:
| Q |
130 |
atacaatgatcattcaagggccaaaataaaaaccacaaaattgaagtca |
178 |
Q |
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| T |
121373 |
atacagtgatcattgaagtgccaaaataaaaaccaccaaattgaagtca |
121421 |
T |
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