View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18478_low_1 (Length: 634)
Name: NF18478_low_1
Description: NF18478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18478_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 14 - 618
Target Start/End: Original strand, 12924184 - 12924788
Alignment:
| Q |
14 |
atatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcaca |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12924184 |
atatgaatgcaattataaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaacggatattgtatcacttgcaca |
12924283 |
T |
|
| Q |
114 |
tcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtctacaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaa |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12924284 |
tcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcaccagtctacaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaa |
12924383 |
T |
|
| Q |
214 |
ccaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccacttgaggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttg |
313 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
12924384 |
caaaatgacaaatagaaacagaaatggtttcttcttccgcgaaaccacttgaggttgcgattgcatctgaatttcctcctttggcagtgcatcgcgtctg |
12924483 |
T |
|
| Q |
314 |
agatcttgcaaaacatactcaattatctcatccctaagcttcttatacagaggatcagcattgtccaaagggaggatttcatcaggtttaaaatttttga |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12924484 |
agatcttgcaaaacatactcaattatctcatccctaagcttcttatacggaggatcagcattgtccaaagggaggatttcatctggtttaaaatttttga |
12924583 |
T |
|
| Q |
414 |
gaaaattcacagtgatatcatcctccacagaagtgaatttgtcaaattcacacacatcaaagcaattgctggagctattctcccctgtgtcggttttctt |
513 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12924584 |
gaaaattcacagtgatatcatcctccacagaagtgaatttgtcaaattcacacacatcaaagcaattgctggaactattctcccctgtgtcggttttctt |
12924683 |
T |
|
| Q |
514 |
ttcaggctgaagcaaagtgacagaagaaggttcttccaacaagaaagtctgaaacagagagattaacaataatttcaatctgttgaaacctcaactgtta |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12924684 |
ttcaggctgaagcaaagtgacagaagaaggttcttccaacaagaaagtctgaaacagagagattaacaataattccaatctgttgaaacctcaactgtta |
12924783 |
T |
|
| Q |
614 |
aactt |
618 |
Q |
| |
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||||| |
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| T |
12924784 |
aactt |
12924788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 30 - 569
Target Start/End: Complemental strand, 30791463 - 30790949
Alignment:
| Q |
30 |
aaaccttccatcaaaagactaatacaaattaagaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaat |
129 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||| |
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| T |
30791463 |
aaaccttccatcaaaagactaatacaaattgagaacaaaccaaatcacctgaagtctaagaacagatattgtatcacttgcacatcaatgagtaaaaaa- |
30791365 |
T |
|
| Q |
130 |
caacctcagtgaaatggctcatgttggcaccagtctacaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaaccaaatgacaaataga |
229 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| | || |
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|
| T |
30791364 |
-------------------catgttggcacaagtctacaatcatcatcaggagtgaagaaaagcata--taatgctgcaatgaaccaaatgacaca--ga |
30791288 |
T |
|
| Q |
230 |
aacagaaatggtttcttcttccgcgaaaccacttgaggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttgagatcttgcaaaacat |
329 |
Q |
| |
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|||| ||||||||||||||| | ||| ||||||||||||||| || |||||||| |||||| ||||||||||| | ||||||||||||||||||||| |
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|
| T |
30791287 |
aacaaaaatggtttcttcttatccaaaagcacttgaggttgcgatcgcgtctgaattccctcctctggcagtgcattgtgtttgagatcttgcaaaacat |
30791188 |
T |
|
| Q |
330 |
actcaattatctcatccctaagcttcttatacagaggatcagcattgtccaaagggaggatttcatcaggtttaaaatttttgagaaaattcacagtgat |
429 |
Q |
| |
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| |||| ||||||||||||||||||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30791187 |
attcaactatctcatccctaagcttcttatcc-gaggatcagcatagtccaaattgaggatttcatcaggtttaaaatttttgagaaaattaacagtgat |
30791089 |
T |
|
| Q |
430 |
atcatcctccacagaagtgaatttgtcaaattcacacacatcaaagcaattgctggagctattctcccctgtgtcggttttcttttcaggctgaagcaaa |
529 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||| ||||||||||||| || || ||||| |||| |||||| ||||||||||| |||||||||||| |
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| T |
30791088 |
atcatcctccacataagtgaatttgtcgaattcacacgcatcaaagcaattactcgaactattttcccatgtgtctgttttcttttccggctgaagcaaa |
30790989 |
T |
|
| Q |
530 |
gtgacagaagaaggttcttccaacaagaaagtctgaaaca |
569 |
Q |
| |
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|| | ||||||||||||||||||||||| ||||||||||| |
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| T |
30790988 |
gttatagaagaaggttcttccaacaagatagtctgaaaca |
30790949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 433 - 569
Target Start/End: Original strand, 22382725 - 22382861
Alignment:
| Q |
433 |
atcctccacagaagtgaatttgtcaaattcacacacatcaaagcaattgctggagctattctcccctgtgtcggttttcttttcaggctgaagcaaagtg |
532 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| | || ||| |||||||||||||||||||||||| |||| |
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| T |
22382725 |
atcctccacataagtgaatttgtcaaattcacacacatcaaagcaattactggaactatttttccttgtctcggttttcttttcaggctgaagcgaagtt |
22382824 |
T |
|
| Q |
533 |
acagaagaaggttcttccaacaagaaagtctgaaaca |
569 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
22382825 |
acagaagaaggttcttccaacacgaaagtctgaaaca |
22382861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 61 - 394
Target Start/End: Original strand, 22382395 - 22382716
Alignment:
| Q |
61 |
agaacaaacaaaatcacctcaagtctaagaatggatattgtatcacttgcacatcaatgaatagaaaatcaacctcagtgaaatggctcatgttggcacc |
160 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
22382395 |
agaacaaaccaaatcacctcaagtctaagaacagatattgtatcacttgcacatcaatgtatagaaac------------------cttatgttggcact |
22382476 |
T |
|
| Q |
161 |
agtctacaatcatcatcaggagtgaagaaaagaatagctaatagtgcaatgaaccaaatgacaaatagaaacagaaatggtttcttcttccgcgaaacca |
260 |
Q |
| |
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|| | |||||||||||| | |||| ||||||| |||||||||| |||||||||| |||| || | ||||||| ||||| ||| ||||||| | ||| || |
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| T |
22382477 |
aggcgacaatcatcatcggaagtgtagaaaagcatagctaatactgcaatgaacaaaattgcacagagaaacaaaaatgcttttttcttccccaaaagca |
22382576 |
T |
|
| Q |
261 |
c------ttgaggttgcgactgcatctgaatttcctcctttggcagtgcatcgcgtttgagatcttgcaaaacatactcaattatctcatccctaagctt |
354 |
Q |
| |
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| ||||||||| | || |||||||| ||||||||||||| |||| |||||||||||| ||||||| | ||||| ||||||||||||||||| |
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| T |
22382577 |
caagcacttgaggttgtaatcgcgtctgaattccctcctttggcagagcattgcgtttgagatcgtgcaaaatgtcctcaaccatctcatccctaagctt |
22382676 |
T |
|
| Q |
355 |
cttatacagaggatcagcattgtccaaagggaggatttca |
394 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
22382677 |
cttataccgaggatcagcattgtccaaagtcaggatttca |
22382716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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