View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18478_low_10 (Length: 288)
Name: NF18478_low_10
Description: NF18478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18478_low_10 |
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| [»] scaffold0097 (2 HSPs) |
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Alignment Details
Target: scaffold0097 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 17411 - 17215
Alignment:
| Q |
77 |
cctaagggtttcaacaaatcaacgcggatgagtatacctccaccgcagcaattcccttcatcacaacttaacacagagctccgatgagcatacctccatc |
176 |
Q |
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| T |
17411 |
cctaagggtttcaacaaatcaacgcggatgagtatacctccaccgcagcaattcccttcatcacaacatcacacacagctccgatgagcatacctccatc |
17312 |
T |
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| Q |
177 |
aatgtcatggcgtaagatcaacgtgctttcatctgtaaccctctccgaagaactcatcatcgaaatcctatccttgcttaaagtgaaaccacttatt |
273 |
Q |
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| T |
17311 |
aatgtcatggcgtaaaatcaacgtgctttcgtctgtaaccctctcggaagaactcatcatcgaaatcctatccttgcttaaagtgaaaccacttatt |
17215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 21655 - 21616
Alignment:
| Q |
44 |
ctatatatataatagctcgtgtagccttgttaccctaagg |
83 |
Q |
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| T |
21655 |
ctatatatataatagctcgtgtagccttgttaccctaagg |
21616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 77 - 273
Target Start/End: Complemental strand, 20713572 - 20713376
Alignment:
| Q |
77 |
cctaagggtttcaacaaatcaacgcggatgagtatacctccaccgcagcaattcccttcatcacaacttaacacagagctccgatgagcatacctccatc |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |
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| T |
20713572 |
cctaagggtttcaacaaatcaacgcggatgagtatacctccaccgcagcaattcccttcatcacaacatcacacacagctccgatgagcatacctccatc |
20713473 |
T |
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| Q |
177 |
aatgtcatggcgtaagatcaacgtgctttcatctgtaaccctctccgaagaactcatcatcgaaatcctatccttgcttaaagtgaaaccacttatt |
273 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20713472 |
aatgtcatggcgtaaaatcaacgtgctttcgtctgtaaccctctcggaagaactcatcatcgaaatcctatccttgcttaaagtgaaaccacttatt |
20713376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 20717818 - 20717779
Alignment:
| Q |
44 |
ctatatatataatagctcgtgtagccttgttaccctaagg |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20717818 |
ctatatatataatagctcgtgtagccttgttaccctaagg |
20717779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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