View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18478_low_11 (Length: 241)
Name: NF18478_low_11
Description: NF18478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18478_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 38875400 - 38875603
Alignment:
| Q |
19 |
catagggatgtaaaatctagcaaaataggaatgtaatcaaatgtgtcggtgtcttgacgatgtatgtcaccaacacatgtcggacacaacttcaatgtga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38875400 |
catagggatgtaaaatctagcaaaataggaatgtaatcaaatgtgtcggtgtcttgacgatatatgtcaccaacacatgtcggacacaacttcaatgtga |
38875499 |
T |
|
| Q |
119 |
agaattggtgctacatagtatatcattattaaactatataatatttacttatcattcttaaactatgatcatgannnnnnnnnattcacaacaagcaata |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38875500 |
agaattgatgctacatagtatatcattattaaactatataatatttacttatcattcttaaactatgatcatgatttttttttattcacaacaagcaata |
38875599 |
T |
|
| Q |
219 |
gtcc |
222 |
Q |
| |
|
|||| |
|
|
| T |
38875600 |
gtcc |
38875603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 38872249 - 38872417
Alignment:
| Q |
19 |
catagggatgtaaaatctagcaaaataggaatgtaatcaaatgtgtcggtgtcttgacgatgtatgtcaccaacacatgtcggacacaacttcaatgtga |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38872249 |
catagggatgtagaatctagcaaaatagagatgtaatcaaatatgtcg-tgtcttgatgatgtatgtcaccaacacatgtcggacacaacatcaatgtga |
38872347 |
T |
|
| Q |
119 |
agaattggtgctacatagtatatcattattaaactatataatatttacttatcattcttaaactatgatcatga |
192 |
Q |
| |
|
|||| || ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38872348 |
agaaatgatgcaacatagtatatcattattaaactatataatatttactta----tcttaaactatgatcatga |
38872417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 38869168 - 38869219
Alignment:
| Q |
133 |
atagtatatcattattaaactatataatatttacttatcattcttaaactat |
184 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
38869168 |
atagtctatcatcattaaactatattatatttacttaacattcttaaactat |
38869219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University