View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18478_low_2 (Length: 604)
Name: NF18478_low_2
Description: NF18478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18478_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 13 - 586
Target Start/End: Original strand, 45195851 - 45196429
Alignment:
| Q |
13 |
cataggatagaaaaaataatgacattatataccagtgtcttggtttgacctttagttcaatcctcataataaaatgaatt-------tattttcattgat |
105 |
Q |
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| T |
45195851 |
cataggatagaaaaaataatgacattatatactagtgccttggtttgacctttagttcaatcctcataataaaatgaattatgagtttattttcattgat |
45195950 |
T |
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| Q |
106 |
cggacatgaaaggaagagttaggatcctcctcatttcttagnnnnnnnnnnnnnnnnnncttcattactttagttttgtatgtataaatcacgtaagtgc |
205 |
Q |
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| T |
45195951 |
cggacttgaaaggaagagttaggatcctcctcatttcttagaaaaagaaaaaaaaat--cttcattactttagttttgtatgtataaatcacataaatgc |
45196048 |
T |
|
| Q |
206 |
ttaataaatatcatatattttgaaaaagagaagtgctatatctcgcgaacaaaatcgtcctgagaattccacgaattaatttcagtcgttagatattaga |
305 |
Q |
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| T |
45196049 |
ttaataaatatcatatattttgaaaaagagaagtgatatacctcgcgaacaaaatcgttccgagaattccacgaattaatttcagtcgttaaatattaga |
45196148 |
T |
|
| Q |
306 |
atttctggaaaacatggattgatagaaataaaagtgggtcacgctgcagttacacatttatgtcgtgaagttttcgtgagccattttttcgggacatcta |
405 |
Q |
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| T |
45196149 |
atttctggaaaacatggattgatagaaataaaagtgggtcacgctgcagttacacatttatgtcgtgaagttttcgtgagccattttttcgggacatcta |
45196248 |
T |
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| Q |
406 |
gcatttctgtttgaaaatatatgttatcttacacataaaactatagtaattaaaattttcatttctatatagaaatgaagaggatcgtactctataagga |
505 |
Q |
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| T |
45196249 |
gcatttctgtttgaaaatatatgttatcttacacataaaactatagtaattaaaattttcatttctatatagaaataaagaggatcgtactctataagga |
45196348 |
T |
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| Q |
506 |
atggggcattaatcatgttcactttgcgaccataacgattttcacttcctaacacttgttggtggtgatatcacaattagt |
586 |
Q |
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| T |
45196349 |
atggggcattaatcatgttcactttgcgaccataacgattttcacttgctaacacttgttggtggtgatatcacaattagt |
45196429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 8227881 - 8227939
Alignment:
| Q |
168 |
cattactttagttttgtatgtataaatc-acgtaagtgcttaataaatatcatatattt |
225 |
Q |
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| T |
8227881 |
cattactatagttttgtgtgtataaatcaacataaatgcttaataaatatcaaatattt |
8227939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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