View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18478_low_3 (Length: 589)

Name: NF18478_low_3
Description: NF18478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18478_low_3
NF18478_low_3
[»] chr3 (4 HSPs)
chr3 (11-573)||(31141405-31141967)
chr3 (28-139)||(25889642-25889754)
chr3 (16-105)||(37133804-37133894)
chr3 (25-132)||(30046435-30046542)
[»] chr7 (6 HSPs)
chr7 (14-261)||(1716503-1716754)
chr7 (16-139)||(7961783-7961907)
chr7 (44-139)||(11269991-11270087)
chr7 (98-275)||(1345199-1345380)
chr7 (16-69)||(1103164-1103217)
chr7 (179-231)||(38969274-38969326)
[»] chr6 (13 HSPs)
chr6 (45-275)||(11681314-11681548)
chr6 (16-139)||(2921841-2921965)
chr6 (24-139)||(13556003-13556119)
chr6 (16-140)||(11678846-11678967)
chr6 (16-138)||(13557975-13558098)
chr6 (13-89)||(14721712-14721787)
chr6 (16-89)||(2923208-2923282)
chr6 (16-89)||(16910146-16910219)
chr6 (179-265)||(22258514-22258602)
chr6 (21-89)||(11677133-11677201)
chr6 (11-87)||(22880021-22880097)
chr6 (16-87)||(16403530-16403600)
chr6 (11-87)||(22898136-22898212)
[»] chr4 (8 HSPs)
chr4 (16-148)||(27272577-27272711)
chr4 (25-126)||(29235134-29235236)
chr4 (11-126)||(10395964-10396080)
chr4 (11-89)||(53469703-53469781)
chr4 (16-155)||(53472525-53472663)
chr4 (16-122)||(32015169-32015276)
chr4 (25-139)||(50887398-50887513)
chr4 (37-140)||(9010408-9010512)
[»] chr2 (5 HSPs)
chr2 (13-94)||(10128504-10128585)
chr2 (11-86)||(8761225-8761301)
chr2 (22-165)||(25550091-25550234)
chr2 (16-89)||(37965530-37965604)
chr2 (21-61)||(15140819-15140859)
[»] chr8 (2 HSPs)
chr8 (16-134)||(33897216-33897335)
chr8 (47-126)||(42001905-42001985)
[»] chr5 (4 HSPs)
chr5 (16-89)||(32795580-32795653)
chr5 (16-126)||(19670676-19670787)
chr5 (13-81)||(26896583-26896651)
chr5 (16-87)||(32796346-32796417)
[»] chr1 (7 HSPs)
chr1 (11-139)||(24284824-24284953)
chr1 (120-275)||(12466064-12466222)
chr1 (16-89)||(22827077-22827150)
chr1 (16-89)||(22840975-22841048)
chr1 (46-132)||(12458581-12458668)
chr1 (18-139)||(22826631-22826753)
chr1 (21-99)||(24272758-24272836)
[»] scaffold0007 (1 HSPs)
scaffold0007 (21-89)||(260215-260283)
[»] scaffold0065 (1 HSPs)
scaffold0065 (39-138)||(34724-34822)


Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 11 - 573
Target Start/End: Original strand, 31141405 - 31141967
Alignment:
Q  11 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagtttgctatagttgg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  31141405 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaatagtaagtaagtttgctataattgg 31141504  T
Q  111 tattacctctactatttaatatttgtaataattgattatggtgaaattcttttcatgactctgtctgcggattagtcaacacactgatggatactacgct 210  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| || | ||||||||||     
T  31141505 tattacctctactattcaatatttgtaataattgattatggtggaattcttttcatgactctatctgtggattagtcaacacattgctcgatactacgcc 31141604  T
Q  211 aaatcttgtgtcgtttttattttatcctactattattatcattattctcgcgtcccgttgtaacatacttttatataaccttttgcatggggcatcaagg 310  Q
    | ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31141605 atatcttgtgtcgttttgattttgtcctactattattatcattattctcgcttcccgttgtaacatacttttatataaccttttgcatggggcatcaagg 31141704  T
Q  311 aagatggtgaaatgcccatttgttatatatacgatcaagagcatatcatacaagagtgataagagggaactttattagttgaagcatgaatatctttcct 410  Q
    |||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31141705 aagatggtgaaatgcccatttgttatctatacgatcaagagcataccgtacaagagtgataagagagaactttattagttgaagcatgaatatctttcct 31141804  T
Q  411 aacattttgaaatatgcctttgtttctgttccgccaaatctctcagaatgttacaataaaaagtagtcacgtcgtaatagaagcatgatactcaaaccaa 510  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  31141805 aacattttgaaatatgtctttgtttctgttccgccaaatctatcagaatgttacaataaaaagtagtcatgtcataatagaagcatgatactcaaaccaa 31141904  T
Q  511 aacttcaataaatattcataaatatataaaatcatcgaaatggaacgaacatacctttaggtg 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31141905 aacttcaataaatattcataaatatataaaatcatcgaaatggaacgaacatacctttaggtg 31141967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 25889642 - 25889754
Alignment:
Q  28 tatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatt 126  Q
    ||||||||| ||| | |||||||||||||||||||  ||||||||||||||||||||||||| |||  | |||||||||| | | | |||||||| ||||    
T  25889642 tatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtgggttttgctatagctagcagtacctctattatt 25889741  T
Q  127 taatatttgtaat 139  Q
    || | ||||||||    
T  25889742 tagtctttgtaat 25889754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 37133894 - 37133804
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctata 105  Q
    |||| ||| |||||| | ||||||||||| ||| ||||||||||||| || |||||||||||| || ||||||| ||| || |||||||||    
T  37133894 aatatgaaaaaatatacgaagatttagccgtatgaataaaagtcttgtgtattagtatttcttacatcaatagttagtgaattttgctata 37133804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 30046435 - 30046542
Alignment:
Q  25 aaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctact 123  Q
    ||||||||||||| ||  |||||||||||||||  ||| |||||||||||||||| | ||||||| |||  | |||||||||| | |  |||||||||||    
T  30046435 aaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttgta-caatagttagtcggttttgctatagctagcgttacctctact 30046533  T
Q  124 atttaatat 132  Q
    ||| |||||    
T  30046534 attcaatat 30046542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 1716754 - 1716503
Alignment:
Q  14 agaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggta 112  Q
    |||||| ||| ||||||| ||||| ||  ||||||||||||| |||||| |||||| ||||||||||| ||||||| ||| || |||  ||||| |||||    
T  1716754 agaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatcaatagttagtgagtttttttatagctggta 1716655  T
Q  113 ttacctctactatttaatatttgtaataattgattatggtgaaattcttttc-atgactctgtctgcggattagtcaacacactgatggatactacgcta 211  Q
    |||||||||||||| | ||| | | ||||| |||||| ||| |||||||||| || |||||  | |   ||||||||||||| || ||||||||||| ||    
T  1716654 ttacctctactattcagtatatatgataatcgattatagtggaattcttttcaataactctacccgaaaattagtcaacacattgttggatactacgtta 1716555  T
Q  212 aatcttgtgtcgtttttattttatc--ctactattattatcattattctcgc 261  Q
    |||||| |||| |||||||| | ||   |||||||||| |||||||||||||    
T  1716554 aatcttatgtcatttttattctgtcttttactattattgtcattattctcgc 1716503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 7961783 - 7961907
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 114  Q
    |||| |||||||||||||||| ||| | |||||||||||||| |||| |||||||||||||||||||||||||| |||  | |||||||||| | | |||    
T  7961783 aatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcatt 7961882  T
Q  115 acctctactatttaatatttgtaat 139  Q
    || ||||||||| || |||||||||    
T  7961883 acttctactattcaaaatttgtaat 7961907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 11269991 - 11270087
Alignment:
Q  44 catataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatttaatatttgtaat 139  Q
    |||||||||||||| |||| |||||||||||  ||||||||||||| |||  | |||||||||  | || |||||||||||||| | ||||||||||    
T  11269991 catataaataaaagccttgtgtgttagtattagttgcaccaatagttagtgggttttgctataactagtgttacctctactattcagtatttgtaat 11270087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 275
Target Start/End: Original strand, 1345199 - 1345380
Alignment:
Q  98 ttgctatagttggtattacctctactatttaatatttgtaataattgattatggtgaaattcttttca-tgactctgtctgcggattagtcaacacactg 196  Q
    ||||||| | || |||||| ||||||||| | ||| |||||| || |||||| ||| |||| |||||| ||||||||  ||  ||||||| |  |   ||    
T  1345199 ttgctattgctgatattacttctactattcagtatatgtaatcatcgattatagtgtaatttttttcaatgactctgcatgtagattagtaagaatgttg 1345298  T
Q  197 atggatactacgctaaatcttgtgtcg-tttttattttatc--ctactattattatcattattctcgcgtcccgttgtaaca 275  Q
     ||||||||||| | |||||||||||| |||||||| ||||   |||||||||||||||||||||  | ||||||| |||||    
T  1345299 ttggatactacgttcaatcttgtgtcgttttttattctatcttttactattattatcattattcttacatcccgttataaca 1345380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 1103164 - 1103217
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtta 69  Q
    |||| ||||||||||| ||||| || |||||||||||||||| |||| ||||||    
T  1103164 aatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgtta 1103217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 38969326 - 38969274
Alignment:
Q  179 ggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttatt 231  Q
    |||||||||| ||||  | ||||||| ||| ||||||||||||||||||||||    
T  38969326 ggattagtcagcacatggctggataccacgttaaatcttgtgtcgtttttatt 38969274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 45 - 275
Target Start/End: Complemental strand, 11681548 - 11681314
Alignment:
Q  45 atataaataaaagtcttgcgtgttagta-tttcttgcaccaatagtaagtaagtttgctatagttggtattacctctactatttaatatttgtaataatt 143  Q
    |||||||||||||| ||| ||||||||| ||||||||| ||||||| |||   ||| ||||||  |||||||||| ||||||| | ||| |||||| |||    
T  11681548 atataaataaaagttttgtgtgttagtaatttcttgcaacaatagttagtggttttactatagcaggtattacctatactattcagtatatgtaatcatt 11681449  T
Q  144 gattatggtgaaattcttttcat-gactctgtctgcggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatc--ctac 240  Q
    |||||| ||| |||| ||||||  | || ||   | |||||||||| |||| ||||| |||| ||| |||||||||||||||||||  ||| ||   |||    
T  11681448 gattatagtggaatttttttcagcggctttgctcgtggattagtcagcacattgatgcataccacgttaaatcttgtgtcgtttttcatttgtcttttac 11681349  T
Q  241 tattattatcattattctcgcgtcccgttgtaaca 275  Q
    |||||||||||||||| |||||||||||| |||||    
T  11681348 tattattatcattattatcgcgtcccgttataaca 11681314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 2921965 - 2921841
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 114  Q
    |||| |||||||||||||| || || |  |||||||||||||||||  |||||||||||||||||||||||||| |||  | |||||||||| | | |||    
T  2921965 aatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcatt 2921866  T
Q  115 acctctactatttaatatttgtaat 139  Q
    || |||| |||| || |||||||||    
T  2921865 acgtctaatattcaaaatttgtaat 2921841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 13556119 - 13556003
Alignment:
Q  24 gaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctac 122  Q
    |||||||||||||  || | |||||||||||||| |||| |||||||||||||||||||||||||| | |  | |||||||||| | | ||||| |||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttctac 13556020  T
Q  123 tatttaatatttgtaat 139  Q
    |||| || |||||||||    
T  13556019 tattcaaaatttgtaat 13556003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 11678846 - 11678967
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagtttgctatagttggtatta 115  Q
    |||| ||||||||||||||||  || | ||| ||||||||| ||||| ||||||||||||||  ||||||||||     | |||||||||||| | ||||    
T  11678846 aatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaatagt---ggattttgctatagttagcatta 11678942  T
Q  116 cctctactatttaatatttgtaata 140  Q
    ||||||||||| | |||||||||||    
T  11678943 cctctactattcagtatttgtaata 11678967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 13558098 - 13557975
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtatt 114  Q
    |||| ||||||||||||||||  || | ||||||||||||||  ||| ||||||||||||| |||||||||||| |||  | |||||||| | | | |||    
T  13558098 aatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattttgctattgctagcatt 13557999  T
Q  115 acctctactatttaatatttgtaa 138  Q
    || ||||||||| || ||||||||    
T  13557998 acttctactattcaaaatttgtaa 13557975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 14721712 - 14721787
Alignment:
Q  13 gagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||| ||||  | | ||||||||||||| |||||||    
T  14721712 gagaatagaaagaaatatgcaaagatttggcc-tataaataaaagccttgtttataagtatttcttgcagcaatagt 14721787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 2923282 - 2923208
Alignment:
Q  16 aataggaagaaatatgcaaa-gatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    |||| ||||||||||||||| |  || | ||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  2923282 aatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagt 2923208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 16910219 - 16910146
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    |||| |||| |||||||||||| || ||  ||||||||||||| ||| |||||||||||| |||| ||||||||    
T  16910219 aatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagt 16910146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 22258514 - 22258602
Alignment:
Q  179 ggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttattttatc--ctactattattatcattattctcgcgtcc 265  Q
    ||||||||||||||| || ||||||| ||| | ||| |||||||||||| ||| | ||   |||||||||| |||||||||||||||||    
T  22258514 ggattagtcaacacattgctggataccacgtttaatgttgtgtcgttttcattatgtcttttactattattgtcattattctcgcgtcc 22258602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 11677133 - 11677201
Alignment:
Q  21 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    ||||||||||||||||  ||   ||||||||||||| ||||| ||||||||||||||  ||||||||||    
T  11677133 gaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagt 11677201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 22880097 - 22880021
Alignment:
Q  11 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 87  Q
    |||||||||| |||||||||  ||| | || | |||||||||||| || ||| |||||| |||||||||||||||||    
T  22880097 cagagaatagaaagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttgcaccaata 22880021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 16403530 - 16403600
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 87  Q
    |||| |||||||||||||| || |||| ||||||||||||||||||| |||||  ||||  |||||||||||    
T  16403530 aatatgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtttatattatttgcaccaata 16403600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 22898212 - 22898136
Alignment:
Q  11 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 87  Q
    |||||||||| |||||||||  ||| | || | |||||||||||| || ||  |||||| |||||||||||||||||    
T  22898212 cagagaatagaaagaaatatataaatacttggtcatataaataaaggttttttgtgttaatatttcttgcaccaata 22898136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 27272577 - 27272711
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag--tttgctatagttggtat 113  Q
    |||| |||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||  |  |||||||||| | | ||    
T  27272577 aatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagctagcat 27272676  T
Q  114 tacctctactatttaatatttgtaataattgatta 148  Q
    ||| ||||||||| || ||||||||| ||| ||||    
T  27272677 tacttctactattcaaaatttgtaattattaatta 27272711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 29235236 - 29235134
Alignment:
Q  25 aaatatgcaaagatttagccatataaataaaagtcttgcgtgttagt-atttcttgcaccaatagtaagtaagtttgctatagttggtattacctctact 123  Q
    ||||||||||||| || |||||||||||||| | |||| |||||||| ||||||||||||||||||  ||   |||||||||||||||||||| ||||||    
T  29235236 aaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaatagttcgtggttttgctatagttggtattacatctact 29235137  T
Q  124 att 126  Q
    |||    
T  29235136 att 29235134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 10395964 - 10396080
Alignment:
Q  11 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagtt-tgctatagttg 109  Q
    ||||||| | ||||||||||||||||| |  |||||||||||||||| |||| |||||||||||||||||| ||||||| |||  ||| |||||||| ||    
T  10395964 cagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggttatgctatagatg 10396063  T
Q  110 gtattacctctactatt 126  Q
    || || | |||||||||    
T  10396064 gtgttccttctactatt 10396080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 53469781 - 53469703
Alignment:
Q  11 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    |||| |||| ||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||| | |||||||    
T  53469781 cagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgaatcaatagt 53469703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 53472663 - 53472525
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt-gctatagttggtatt 114  Q
    |||| ||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||| ||||||||| || |||  |||| ||||||| | |  ||    
T  53472663 aatacgaagaaatatgcaaagactt-gccatataaataaaagt-ttgtgtgttagtatttcatgcaccaatggttagtgggttttgctatagctagcgtt 53472566  T
Q  115 acctctactatttaatatttgtaataattgattatggtgaa 155  Q
    |||||||||||| | ||| |||||| || |||||| |||||    
T  53472565 acctctactattcagtatctgtaattatcgattatagtgaa 53472525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 32015169 - 32015276
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 114  Q
    |||||||||| ||||||||||| || || | ||||||||| || ||| |||||||||||||||||||||||||| |||  | |||||||||| || ||||    
T  32015169 aataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctgatatt 32015268  T
Q  115 acctctac 122  Q
    || |||||    
T  32015269 acatctac 32015276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 50887513 - 50887398
Alignment:
Q  25 aaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt-gctatagttggtattacctctact 123  Q
    ||||||||||||  || |||||||||||||| |||||| | ||| || || ||| ||| |||||| |||  |||| ||||||| | ||||||||||||||    
T  50887513 aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtgggttttgctatagctagtattacctctact 50887414  T
Q  124 atttaatatttgtaat 139  Q
    ||||| ||| ||||||    
T  50887413 atttagtatatgtaat 50887398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 9010512 - 9010408
Alignment:
Q  37 atttagccatataaataaaagtcttgcgtgttagta-tttcttgcaccaatagtaagta-agtttgctatagttggtattacctctactatttaatattt 134  Q
    |||||||| ||||||||||   |||| ||||||||| |||| |||||||||||| |||  | |||| ||||||||||||||||||||  ||| | |||||    
T  9010512 atttagcc-tataaataaagaccttgtgtgttagtaatttcgtgcaccaatagttagtggattttgatatagttggtattacctctagaattcagtattt 9010414  T
Q  135 gtaata 140  Q
    ||||||    
T  9010413 gtaata 9010408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 10128504 - 10128585
Alignment:
Q  13 gagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagta 94  Q
    ||||||| ||||||||||| ||||| || | ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  10128504 gagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagta 10128585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 8761301 - 8761225
Alignment:
Q  11 cagagaataggaagaaatatgcaaaga-tttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaat 86  Q
    |||| |||| ||||||||||||||| | ||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  8761301 cagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaat 8761225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 25550091 - 25550234
Alignment:
Q  22 aagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtattacctct 120  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||| || |||||| |||  | ||| |||||| |||  |||||| |    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtg-tagtatttcttggactaatagttagtggattttcctatagctggagttaccttt 25550189  T
Q  121 actatttaatatttgtaataattgattatggtgaaattcttttca 165  Q
    |||||| | ||| |||||| || |||||| ||  |||||||||||    
T  25550190 actattcagtatctgtaattatcgattatagtagaattcttttca 25550234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 37965604 - 37965530
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtctt-gcgtgttagtatttcttgcaccaatagt 89  Q
    |||| ||||||||||||||||| || |  ||||||||||||||||| | ||||||||||||||||||||||||||    
T  37965604 aatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcaccaatagt 37965530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 15140819 - 15140859
Alignment:
Q  21 gaagaaatatgcaaagatttagccatataaataaaagtctt 61  Q
    ||||||||||| |||||||| | ||||||||||||||||||    
T  15140819 gaagaaatatgtaaagatttggtcatataaataaaagtctt 15140859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 33897216 - 33897335
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 114  Q
    |||||||||||||||| ||||||||  | |||||||||||||||||| |||||||||||| || |||||||| | |||| | |||| |||||||  ||||    
T  33897216 aataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttacaccaataattagtaggttttgttatagtttatatt 33897315  T
Q  115 acctctactatttaatattt 134  Q
    | ||| |||||| |||||||    
T  33897316 atctccactattcaatattt 33897335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 42001905 - 42001985
Alignment:
Q  47 ataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatt 126  Q
    |||||||||||||||| ||||||||| | |||||||||||||| |||| | |||||||||| | | ||||| |||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctataggtagcattacttctactatt 42001985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 32795653 - 32795580
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    |||| ||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||| |||||||||    
T  32795653 aatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagt 32795580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 19670676 - 19670787
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 114  Q
    |||| ||||||||||||||||  |||| |||||||||||||| |||| ||||||||||| |||| ||||||||| |||  | |||||||||| | |  ||    
T  19670676 aatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtgggttttgctatagctagcgtt 19670775  T
Q  115 acctctactatt 126  Q
    ||||||||||||    
T  19670776 acctctactatt 19670787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 26896583 - 26896651
Alignment:
Q  13 gagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgca 81  Q
    ||||||||||||||||||||||||| || ||||||||||||||    ||| ||||||||||||||||||    
T  26896583 gagaataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 32796417 - 32796346
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 87  Q
    |||| ||||||||||||||||  |||| |||||||||||||| |||| ||||||||||| ||||||| ||||    
T  32796417 aatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcacaaata 32796346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 24284824 - 24284953
Alignment:
Q  11 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttg 109  Q
    ||||||||| ||| ||||||||||| |||| || ||||||||||| |  ||| |||||| ||||||||||||||||||| |||  |  || |||||| ||    
T  24284824 cagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgcaccaatagtcagtggatgttactatagctg 24284923  T
Q  110 gtattacctctactatttaatatttgtaat 139  Q
    |||||| |||||||||||| ||| ||||||    
T  24284924 gtattagctctactatttagtatctgtaat 24284953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 275
Target Start/End: Original strand, 12466064 - 12466222
Alignment:
Q  120 tactatttaatatttgtaataattgattatggtgaaattcttttca-tgactctgtctgcggattagtcaacacactgatggatactacgctaaatcttg 218  Q
    ||||||| ||||||| |||| ||| ||||| ||| ||||||||||| || ||||| | | | |||||||| |||| |||||||||| ||| | |||||||    
T  12466064 tactattcaatatttataatcattaattatagtggaattcttttcaatggctctgcccgtgaattagtcagcacattgatggataccacgtttaatcttg 12466163  T
Q  219 tgtcgtttttattttatcct--actattattatcattattctcgcgtcccgttgtaaca 275  Q
    || |||||| ||| | || |  ||||||||  ||||||||||||||||||||| |||||    
T  12466164 tgccgttttcattatgtcttttactattatagtcattattctcgcgtcccgttataaca 12466222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 22827150 - 22827077
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    |||| |||||||||||||||| ||| | |||||||||||||| |||| |||||  |||||||||||||||||||    
T  22827150 aatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagt 22827077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 22840975 - 22841048
Alignment:
Q  16 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    |||| ||||||||||||||||  || | |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  22840975 aatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagt 22841048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 12458581 - 12458668
Alignment:
Q  46 tataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatttaatat 132  Q
    ||||||||||   |||| |||||||||||||||| ||||||||| |||| | ||||||| || ||||||||||||||||||| |||||    
T  12458581 tataaataaagaccttgtgtgttagtatttcttgtaccaatagttagtaggatttgctagagctggtattacctctactattcaatat 12458668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 22826753 - 22826631
Alignment:
Q  18 taggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtattac 116  Q
    |||||| |||| |||||||  || | |||||||||||||| |||  |||||||||||||||||||||||||| |||  | |||||||||| | | |||||    
T  22826753 taggaaaaaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagctagcattac 22826654  T
Q  117 ctctactatttaatatttgtaat 139  Q
     ||||||||| || |||| ||||    
T  22826653 ttctactattcaaaatttttaat 22826631  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 24272758 - 24272836
Alignment:
Q  21 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt 99  Q
    ||||||||||||||||| ||  | ||||| ||||| | |||| |||||||||||||||||||||||||| ||| |||||    
T  24272758 gaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcaccaatagttagtgagttt 24272836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 260283 - 260215
Alignment:
Q  21 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 89  Q
    ||||||||||||||||| |||| || ||||||||||  |||| ||||||||||||||||||||||||||    
T  260283 gaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaatagt 260215  T

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Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 34724 - 34822
Alignment:
Q  39 ttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt-gctatagttggtattacctctactatttaatatttgta 137  Q
    |||| |||||||||||||||||||  ||||||||||  | ||||||||||| |||  |||| ||||||| |  |||||| ||||||||||| ||||||||    
T  34724 ttagtcatataaataaaagtcttg--tgttagtattattagcaccaatagttagtgggttttgctatagctaatattacttctactatttagtatttgta 34821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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