View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18478_low_4 (Length: 412)
Name: NF18478_low_4
Description: NF18478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18478_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 4 - 394
Target Start/End: Original strand, 108720 - 109110
Alignment:
| Q |
4 |
agttttatggctatgagttctgnnnnnnnngagagttgctttcactattttttgtcttcatattggttgatatcctcgcaaaaatactatcttcttataa |
103 |
Q |
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| T |
108720 |
agttttatggctatgagttctgacaaaaaagagagttgctttcacttttttttgtcttcttattggttgttctcctcgccaaaatactctcttcttataa |
108819 |
T |
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| Q |
104 |
gcaaactaaggtctctctacactaatataagtgaaacgtataaagaactaaaatattagggtgttctatgatatgggcctgagatgtttttcgtcttgat |
203 |
Q |
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|||||||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
108820 |
gcaaactatggtctctcttcactaatataagtaagacgtataaagaactaaaatattagggtgttctatgatatgggcctgagaggtttttcgtcttgat |
108919 |
T |
|
| Q |
204 |
ataggcttctacgctgatttctgaggctattgacataagattgtcgagctatactggctaatccaagttcattgcggcgatcttgtcattttccaaaggg |
303 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108920 |
ataggtttctacgctgatttctgaggctattgacataagattgtcgagctatactggctaatccaagttcattgcggcgatcttgtcattttccaaaggg |
109019 |
T |
|
| Q |
304 |
aacttcatttttcgagatgtagggttgatacaatagctcatatagcattaagtatcagccttcctatgataaggttatagggtgacttacc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109020 |
aacttcatttttcgagatgtagggttgatacaatagctcatatagcattaagtatcagccttcctatgataaggttatagggtgacttacc |
109110 |
T |
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