View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18478_low_6 (Length: 377)
Name: NF18478_low_6
Description: NF18478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18478_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 108843 - 108504
Alignment:
| Q |
1 |
tagtgaagagagaccatagtttgcttataagaagagagtattttggcgaggagaacaaccaataagaagacnnnnnnnngtgaaagcaactctctttttt |
100 |
Q |
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| T |
108843 |
tagtgaagagagaccatagtttgcttataagaagagagtattttggcgaggagaacaaccaataagaagacaaaaaaaagtgaaagcaactctctttttt |
108744 |
T |
|
| Q |
101 |
gtcagaactcatagccataaaactgagactggaattcgtccaccgttaggtcaaacttaaactttgccaaaagactcgggatatgtaaatcttcgtttgc |
200 |
Q |
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| T |
108743 |
gtcagaactcatagccataaaactgagactggaattcgtccaccgttaggtcaaacttaaactttgccaaaagactcgggatatgtaaatcttcgtttgc |
108644 |
T |
|
| Q |
201 |
attagatggatcgtcaaaaacaagtatggaaaaagagatatatctcctcacatcttcttgttctcatttattaggctaatttttgggacaatttgtacac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108643 |
attagatggatcgtcaaaaacaagtatggaaaaagagatatatctcctcacatcttcttgttctcatttattaggctaatttttgggacaatttgtacac |
108544 |
T |
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| Q |
301 |
tgtgtctctcttgtatacttatttgattacaatcaagcca |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
108543 |
tgtgtctctcttgtatacttatttgattacaatcaagcca |
108504 |
T |
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