View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18479_high_2 (Length: 365)
Name: NF18479_high_2
Description: NF18479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18479_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 522023 - 521678
Alignment:
| Q |
13 |
cagagaaattttttgggagaaatgatcatcaccagccgcagccgcagccgtagccgcggagaggcaatgtgttctttaggtttaggtaaatgagtgagaa |
112 |
Q |
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| T |
522023 |
cagagaatttttttgggagaaatgatcatcgccagccgcagccg------tagccgcggagaggcaatgtgttctttaggtttaggtaaatgagtgagaa |
521930 |
T |
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| Q |
113 |
attagggatgagacttaagatgataccttttaaacaaaaaatattaatatttgggctagggctggagtttcaaaacagatcgagtctaatatattggccc |
212 |
Q |
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| T |
521929 |
attagggatgagacttaagatgataccttttaaacaaaaa-tattaatatttgggctagggctggagtttcaaaacagaacgagtctaatatattggccc |
521831 |
T |
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| Q |
213 |
aattaatctaatgtgaattattagctgggctaaaataaattataagtctaaagtcattgtagtttatagtaaatattttattggttaaacacataccatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
521830 |
aattaatctaatgtgaattattagctgggctaaaataaattataagtctaaagtcattgtagtttatagtaaatattttattggttaaacacataccatt |
521731 |
T |
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| Q |
313 |
ggtaattggttaagttgaattatttattaattacttgcaccatagttttaagt |
365 |
Q |
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| T |
521730 |
ggtaattggttaagttgaattatttattaattacttgcaccatagttttaagt |
521678 |
T |
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