View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18479_high_3 (Length: 317)
Name: NF18479_high_3
Description: NF18479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18479_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 146 - 298
Target Start/End: Complemental strand, 54086267 - 54086115
Alignment:
| Q |
146 |
cccaatttaatcaacgatccatattccaacaacaacgatgatgaagatgaacgcaaacaaaagaaacaaaaactcttaattggtttgaattctcatctcc |
245 |
Q |
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| T |
54086267 |
cccaatttaatcaacgatccatattccaacaacaacgatgatgaagatgaacgcaaacaaaagaaacaaaaactcttaattggtttgaattctcatctcc |
54086168 |
T |
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| Q |
246 |
aaaacccaactacattattctccaattctcaaactccccaatttcaccctaat |
298 |
Q |
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| T |
54086167 |
aaaacccaactacattattctccaattctcaaactccccaatttcaccctaat |
54086115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 54086343 - 54086304
Alignment:
| Q |
70 |
aaagaggaagaagaagggtcgtccatctctgttggatctt |
109 |
Q |
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| T |
54086343 |
aaagaggaagaagaagggtcgtccatctctgttggatctt |
54086304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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