View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18479_low_1 (Length: 460)
Name: NF18479_low_1
Description: NF18479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18479_low_1 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 15 - 443
Target Start/End: Original strand, 3294519 - 3294947
Alignment:
| Q |
15 |
aataccacctgcgaatctccaaatagagaattgtcgttgtaaggatcccttaactcaaatgcaaagtttaagttagtgtaaatgagtaagtgttaaattc |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294519 |
aataccacctgcgaatctccaaatagagaattgtcgttgtaaggatcccttgactcaaatgcaaagtttaagttagtgtaaatgagtaagtgttaaattc |
3294618 |
T |
|
| Q |
115 |
attcatttttgcatccatgtgggtgtgaatgagtgtaagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctac |
214 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294619 |
tttcatttttgcatccatgtcggtgtgaatgagtgtaagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctat |
3294718 |
T |
|
| Q |
215 |
tttatttttattatcatttaaatagtaaactttatctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaattac |
314 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294719 |
tttatttttattatcattgaaatagtaaactttatctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaattac |
3294818 |
T |
|
| Q |
315 |
catttttactttcaatttgtgttacttgagtgtgtgtcatgcccttcattctttcgatctctgtcttgccaatctttttctacatatattttcttaggca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294819 |
catttttactttcaatttgtgttacttgagtgtgtgtcatgcccttcattctttcgatctctgtcttgccaatctttttctacatatattttcttaggca |
3294918 |
T |
|
| Q |
415 |
gctctagtttatttccatttgatttcctt |
443 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
3294919 |
gctctagtttatttccatttgatttcctt |
3294947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 49496851 - 49496895
Alignment:
| Q |
265 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
49496851 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa |
49496895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 150 - 310
Target Start/End: Complemental strand, 28502999 - 28502839
Alignment:
| Q |
150 |
taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttat |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
28502999 |
taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtgtactttatttttattatcatttaaatagtaaacattac |
28502900 |
T |
|
| Q |
250 |
ctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
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| || |||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||| |
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| T |
28502899 |
ccttttttttagatcttctagtttcgaggatgaaactatttttaagggggtaataatgtaa |
28502839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 19710448 - 19710404
Alignment:
| Q |
265 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
19710448 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa |
19710404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 51444547 - 51444399
Alignment:
| Q |
163 |
ttttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttatctttatttt-gag |
261 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||| ||||| | ||||||||| ||| |
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|
| T |
51444547 |
ttttctttaaaaatatgtatacatattttattctatctatatttaagtctactttattttcattcttgtttaaatagtgaacttgacctttattttagag |
51444448 |
T |
|
| Q |
262 |
atcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
|
||||| |||||||| |||||||| ||| |||||||||||||||||||| |
|
|
| T |
51444447 |
atcttttagtttcggggacgaaattatttttaagggggtaataatgtaa |
51444399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 24274818 - 24274862
Alignment:
| Q |
265 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
24274818 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa |
24274862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 10531113 - 10531045
Alignment:
| Q |
243 |
actttatctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaat |
311 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10531113 |
actttacctttattttgagagcttctagtttcgaggacgaaacaatttttaagggggtaataatgtaat |
10531045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 10531181 - 10531108
Alignment:
| Q |
145 |
gagtgtaagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctacttta |
218 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||| |
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| T |
10531181 |
gagtgtaagatcctagaattttctttaaacatatacatacatattttattctatctatgcttaagtttacttta |
10531108 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0657 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 5596 - 5552
Alignment:
| Q |
265 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
5596 |
ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa |
5552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 25003813 - 25003857
Alignment:
| Q |
265 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||||||| |
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|
| T |
25003813 |
ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa |
25003857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 34635177 - 34635221
Alignment:
| Q |
265 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||||||| |
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|
| T |
34635177 |
ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa |
34635221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 16473947 - 16473991
Alignment:
| Q |
265 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
310 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| ||||||| |
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|
| T |
16473947 |
ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa |
16473991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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