View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1847_high_2 (Length: 474)
Name: NF1847_high_2
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1847_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 108 - 461
Target Start/End: Original strand, 23771869 - 23772221
Alignment:
| Q |
108 |
aacaatacatctatgttaaaacgtttttaggtttaaatattcaaaagttccaactttatatattgagatagctggaaattatattgataaatggatttgc |
207 |
Q |
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| T |
23771869 |
aacaatacatctatgttaaaacgtttttaggtttaaatatgcaaaagttccaactttatatattgaaatagccggaaattatattcataaatggatttgc |
23771968 |
T |
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| Q |
208 |
aactttatattttgagatattcatactaggaaagttgtcatcatggctttctcggaaatttacacgactttataagaacatggttcaatgataagtgtca |
307 |
Q |
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| T |
23771969 |
acctttatattttgagatattcatactaggaaagttgtcatcatggctttctcggaaatttacacgactttataagaacatggttcgatgataagggtca |
23772068 |
T |
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| Q |
308 |
aaatgatgcaatttttacctatacattttagggtatttattaacttattttgcaaggaaccttatgaaaaacccccatttcatgtaaatgtatgaaagct |
407 |
Q |
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| T |
23772069 |
aaatgatgtaatttttacctatacattttagggtatttattaacttattttgcaagaaaccttatggaaaacccccatttcatgtaagtgtatgaaagct |
23772168 |
T |
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| Q |
408 |
aggtcaagtataaaatttattttattatttacctttttgcaacacatatttttg |
461 |
Q |
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| T |
23772169 |
aggtcaagtataaaatttattttatta-ttacctttttgcaacacatatttttg |
23772221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 23771731 - 23771854
Alignment:
| Q |
1 |
atatgggtgttaatcacaggtatgggaatttatccattaatgcgattaccgcaaccaattcaatatgcattttaactcagcccaatagacttcagactca |
100 |
Q |
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| T |
23771731 |
atatgggtgttaatcacaggtatgggaatttatccattaatgcgattaccccaactaattcaatatgcattttaactcagcccaatagacttcagactca |
23771830 |
T |
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| Q |
101 |
atccactaacaatacatctatgtt |
124 |
Q |
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| T |
23771831 |
atccactaacaatacatctatgtt |
23771854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 29331102 - 29331030
Alignment:
| Q |
324 |
acctatacattttagggtatttattaacttattttgcaaggaaccttatgaaaaacccccatttcatgtaaat |
396 |
Q |
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| T |
29331102 |
acctatacattttaatgtacttagtaacttgttttgcaagaaaccttatgaaaaactccaattttgtgtaaat |
29331030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 445
Target Start/End: Complemental strand, 29447118 - 29447023
Alignment:
| Q |
348 |
taacttattttgcaaggaaccttatgaaaaacccccatttcatgtaaatgtatgaaagctaggtcaagtataaaatttattttattatttaccttttt |
445 |
Q |
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| T |
29447118 |
taacttattttgcaagaaaccatatgaaaa-cccccatttcatgtaaatatgagaaagctaggtcaagcatgaaaagtattgtatta-ttaccttttt |
29447023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 396
Target Start/End: Original strand, 23089880 - 23089932
Alignment:
| Q |
344 |
ttattaacttattttgcaaggaaccttatgaaaaacccccatttcatgtaaat |
396 |
Q |
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| T |
23089880 |
ttattaacttattttgcaagaaacctcatgcaaaatccccaattcttgtaaat |
23089932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 398
Target Start/End: Complemental strand, 5819712 - 5819646
Alignment:
| Q |
332 |
attttagggtatttattaacttattttgcaaggaaccttatgaaaaacccccatttcatgtaaatgt |
398 |
Q |
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| T |
5819712 |
attttaaggtattaagtaacttattttgcaagaaaccttatgaaaaacctcccttttgtgtaaatgt |
5819646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 11766717 - 11766642
Alignment:
| Q |
321 |
tttacctatacattttagggtatttattaacttattttgcaaggaaccttatgaaaaacccccatttcatgtaaat |
396 |
Q |
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| T |
11766717 |
tttacctatatattttagggtgctttttaacttattttgcaagaaaccagatgaaaaatgctcaattcatgtaaat |
11766642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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