View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1847_high_3 (Length: 463)
Name: NF1847_high_3
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1847_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 17934045 - 17934492
Alignment:
| Q |
8 |
tttgtaggcccttgccaatttattttgaatgcatggcttgcatctcttgtctttatgcttaaaggtttgtctttcaattgatagaataatccaatgatag |
107 |
Q |
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| T |
17934045 |
tttgtaggcccttgccaatgtattttgaatgcatggctagcatctcttgtctttatgcttaaaggtttgtctttcaattgatagaataatccaatgatag |
17934144 |
T |
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| Q |
108 |
agtaattacatgaatactaagaaccaacctttagttattgaaattattggacactgactttgataatcaattagtttgattatttagtacaatagtgatg |
207 |
Q |
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| T |
17934145 |
agtaattacatgaatactaagaaccaacctttagttattgaaattattggacactgactttgataatcaattagtttgattatttagtacaatagtgatg |
17934244 |
T |
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| Q |
208 |
atcttctaatcaatgtcttcaccttttataatcaaagattggtccttggattgttgaatttatcatgcaactgattatatttatttttcaataattatat |
307 |
Q |
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| T |
17934245 |
atcttctaatcaatgtcttcaccttttataatcaaagattggtccttggattgttgaatttatcatgcaactgattatattgatttttcaataattatat |
17934344 |
T |
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| Q |
308 |
taatccaacaatcaacc---tataattgtaaaacctagagacattgtagctttgatattagagaccaaatatgtaagtaggat-aaaaaccttggtgtaa |
403 |
Q |
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| T |
17934345 |
taatccaacaatcaaccctatataattgtaaaatctagagacattgtagctttgatattagagaccatatatgtaagtaggataaaaaaccttggtgtaa |
17934444 |
T |
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| Q |
404 |
tcaacaaattagtatgagttagccttttgattctaaaatcttgagtat |
451 |
Q |
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| T |
17934445 |
tcaacaaattagtatgagttagccttttgattctaaaatcttgagtat |
17934492 |
T |
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