View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1847_high_7 (Length: 280)
Name: NF1847_high_7
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1847_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 44560734 - 44560993
Alignment:
| Q |
20 |
atcataactcaaatctctatccaacctctcataaactctaggtccattattataaattagagatcaaaaaggttgcgagcatcacttgtatccgtgaaca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
44560734 |
atcataactcaaatctctatccaacctctcataaactctaggtccattattataaattagagatcaaaaaggttgcaagcatcacttgta-ccgtgaaca |
44560832 |
T |
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| Q |
120 |
gcctacatcttcaaacgctctctagagcaccgcttttcttctcatcttgagacaacattgaaatcgccaacaagcatccactggtcttgcatacttccaa |
219 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44560833 |
gcctacatcttcaaacgctctctagagcaccgcctttcttctcatcttgagacaacattgaaatcgccaacaagcatccactggtcttgcatacttccaa |
44560932 |
T |
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| Q |
220 |
caatgtttctgaggtctcccctccactggactaccataaattgccgtaagaaacaaaactc |
280 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44560933 |
caatgtttctgaggtcccccctccactggactaccataaattgccgtaagaaacaaaactc |
44560993 |
T |
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