View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1847_low_12 (Length: 268)

Name: NF1847_low_12
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1847_low_12
NF1847_low_12
[»] chr2 (33 HSPs)
chr2 (9-210)||(12852963-12853164)
chr2 (59-210)||(6708817-6708968)
chr2 (9-208)||(23177751-23177950)
chr2 (9-208)||(23589008-23589207)
chr2 (47-182)||(3528130-3528266)
chr2 (32-208)||(14714592-14714768)
chr2 (32-186)||(4512206-4512360)
chr2 (17-179)||(29424481-29424643)
chr2 (52-182)||(7983561-7983691)
chr2 (33-139)||(26205114-26205220)
chr2 (32-153)||(41296349-41296470)
chr2 (9-137)||(14509286-14509414)
chr2 (32-208)||(21010338-21010514)
chr2 (8-150)||(3532270-3532412)
chr2 (17-137)||(8537097-8537217)
chr2 (25-128)||(25570790-25570893)
chr2 (9-139)||(4829542-4829672)
chr2 (9-115)||(37868973-37869079)
chr2 (37-101)||(45047447-45047511)
chr2 (9-115)||(10367316-10367422)
chr2 (33-150)||(35799613-35799730)
chr2 (17-137)||(28109780-28109900)
chr2 (9-151)||(7037043-7037185)
chr2 (9-55)||(40174757-40174803)
chr2 (10-115)||(12959638-12959743)
chr2 (9-50)||(42028956-42028997)
chr2 (15-55)||(21012073-21012113)
chr2 (15-50)||(15650524-15650559)
chr2 (24-78)||(7490165-7490219)
chr2 (9-55)||(23178875-23178921)
chr2 (9-55)||(23590132-23590178)
chr2 (90-139)||(34512973-34513022)
chr2 (29-137)||(15850571-15850678)
[»] chr3 (34 HSPs)
chr3 (15-210)||(11219513-11219708)
chr3 (32-208)||(32979188-32979364)
chr3 (32-208)||(17349942-17350118)
chr3 (15-208)||(39133100-39133293)
chr3 (9-208)||(53808395-53808594)
chr3 (32-186)||(7483387-7483541)
chr3 (17-153)||(34902889-34903024)
chr3 (9-208)||(8371297-8371496)
chr3 (15-182)||(47765521-47765689)
chr3 (9-128)||(23559896-23560015)
chr3 (24-139)||(12062293-12062408)
chr3 (9-167)||(25583191-25583348)
chr3 (9-119)||(35174311-35174421)
chr3 (9-134)||(43346361-43346486)
chr3 (9-137)||(21128002-21128130)
chr3 (32-170)||(31638218-31638355)
chr3 (113-186)||(7483255-7483328)
chr3 (33-106)||(19622106-19622179)
chr3 (8-137)||(48254800-48254929)
chr3 (9-50)||(54653964-54654005)
chr3 (23-134)||(48867344-48867455)
chr3 (96-161)||(20314647-20314713)
chr3 (9-55)||(25585826-25585872)
chr3 (9-139)||(49333060-49333189)
chr3 (10-55)||(32980445-32980490)
chr3 (9-50)||(51825619-51825660)
chr3 (97-148)||(5123244-5123294)
chr3 (9-48)||(43101971-43102010)
chr3 (96-161)||(20336540-20336606)
chr3 (9-55)||(29536791-29536837)
chr3 (9-50)||(2124106-2124147)
chr3 (61-150)||(42685008-42685097)
chr3 (90-166)||(41264531-41264607)
chr3 (9-49)||(47808105-47808145)
[»] chr1 (33 HSPs)
chr1 (9-208)||(26055987-26056186)
chr1 (32-186)||(50678463-50678616)
chr1 (32-208)||(30551429-30551605)
chr1 (32-208)||(37624410-37624586)
chr1 (34-208)||(51218805-51218980)
chr1 (9-208)||(14764306-14764505)
chr1 (20-155)||(52742869-52743004)
chr1 (23-182)||(9633866-9634025)
chr1 (17-208)||(27689368-27689563)
chr1 (17-208)||(23081966-23082157)
chr1 (9-130)||(49141414-49141535)
chr1 (17-139)||(22766729-22766851)
chr1 (33-119)||(44977322-44977408)
chr1 (9-126)||(51726766-51726883)
chr1 (9-126)||(21277071-21277188)
chr1 (9-120)||(14169696-14169807)
chr1 (9-142)||(19466112-19466244)
chr1 (9-142)||(36509888-36510020)
chr1 (9-50)||(36511329-36511370)
chr1 (9-49)||(3978121-3978161)
chr1 (9-50)||(3979311-3979352)
chr1 (23-116)||(8092689-8092782)
chr1 (9-50)||(47411061-47411102)
chr1 (9-49)||(13641334-13641374)
chr1 (9-137)||(14071115-14071242)
chr1 (83-137)||(40811403-40811457)
chr1 (84-142)||(51300163-51300221)
chr1 (9-50)||(16218476-16218517)
chr1 (9-58)||(40811272-40811321)
chr1 (93-130)||(41872740-41872777)
chr1 (88-129)||(42246047-42246087)
chr1 (10-50)||(16217518-16217558)
chr1 (9-49)||(52181304-52181344)
[»] chr5 (23 HSPs)
chr5 (9-186)||(18693775-18693951)
chr5 (9-186)||(21387714-21387891)
chr5 (52-153)||(7426761-7426862)
chr5 (9-150)||(40058095-40058236)
chr5 (9-139)||(2167424-2167553)
chr5 (21-121)||(5383031-5383131)
chr5 (9-137)||(15856610-15856738)
chr5 (9-129)||(32734208-32734328)
chr5 (8-115)||(19525221-19525328)
chr5 (9-58)||(22819507-22819556)
chr5 (90-166)||(30910904-30910980)
chr5 (23-137)||(223317-223431)
chr5 (9-75)||(42510191-42510257)
chr5 (52-88)||(7345350-7345386)
chr5 (9-49)||(38473554-38473594)
chr5 (9-55)||(15857611-15857657)
chr5 (10-48)||(42979526-42979564)
chr5 (9-137)||(38471366-38471495)
chr5 (9-49)||(10084675-10084715)
chr5 (10-106)||(12830880-12830976)
chr5 (10-106)||(12862860-12862956)
chr5 (90-150)||(22308694-22308754)
chr5 (73-129)||(24761620-24761676)
[»] scaffold0051 (2 HSPs)
scaffold0051 (32-186)||(39763-39917)
scaffold0051 (8-49)||(22203-22244)
[»] scaffold1974 (1 HSPs)
scaffold1974 (9-186)||(490-667)
[»] scaffold1878 (1 HSPs)
scaffold1878 (9-186)||(607-784)
[»] chr8 (41 HSPs)
chr8 (9-181)||(37276110-37276282)
chr8 (8-177)||(36756140-36756309)
chr8 (32-186)||(13513520-13513674)
chr8 (32-186)||(13603053-13603207)
chr8 (32-186)||(21670164-21670318)
chr8 (32-208)||(13363418-13363594)
chr8 (23-208)||(44103134-44103321)
chr8 (24-153)||(7486169-7486298)
chr8 (32-182)||(10052204-10052354)
chr8 (32-150)||(21961923-21962041)
chr8 (9-153)||(117125-117268)
chr8 (9-137)||(13366961-13367089)
chr8 (52-186)||(45541604-45541733)
chr8 (23-153)||(39546572-39546702)
chr8 (9-102)||(36938758-36938851)
chr8 (24-129)||(35944000-35944105)
chr8 (32-152)||(39325729-39325850)
chr8 (33-139)||(21267233-21267339)
chr8 (9-126)||(36070255-36070372)
chr8 (15-139)||(8095429-8095553)
chr8 (9-137)||(24069357-24069485)
chr8 (15-149)||(2421191-2421326)
chr8 (9-128)||(20308682-20308801)
chr8 (9-128)||(21095315-21095434)
chr8 (24-137)||(44606231-44606344)
chr8 (31-137)||(34617106-34617212)
chr8 (9-137)||(7816000-7816127)
chr8 (31-137)||(7770809-7770915)
chr8 (31-137)||(7796719-7796825)
chr8 (9-115)||(19913569-19913675)
chr8 (9-137)||(8395072-8395200)
chr8 (24-80)||(16363780-16363836)
chr8 (9-49)||(36940032-36940072)
chr8 (15-127)||(39220762-39220874)
chr8 (90-137)||(6397943-6397990)
chr8 (9-55)||(37274964-37275010)
chr8 (23-112)||(12281716-12281805)
chr8 (15-80)||(31871478-31871543)
chr8 (52-137)||(39515319-39515404)
chr8 (61-142)||(41629839-41629920)
chr8 (25-121)||(37324615-37324711)
[»] chr4 (37 HSPs)
chr4 (32-170)||(44302820-44302958)
chr4 (15-208)||(29687818-29688011)
chr4 (32-208)||(43894205-43894381)
chr4 (9-186)||(38418879-38419056)
chr4 (34-186)||(2293386-2293539)
chr4 (17-208)||(11094611-11094800)
chr4 (15-153)||(39592184-39592322)
chr4 (9-152)||(35787873-35788016)
chr4 (32-186)||(36604702-36604857)
chr4 (17-153)||(6616105-6616242)
chr4 (9-129)||(6140279-6140399)
chr4 (9-129)||(50530580-50530700)
chr4 (17-99)||(86888-86970)
chr4 (9-137)||(26393038-26393166)
chr4 (9-150)||(38370359-38370501)
chr4 (9-129)||(11114899-11115019)
chr4 (9-130)||(17319119-17319240)
chr4 (9-137)||(29663719-29663847)
chr4 (9-137)||(56296270-56296398)
chr4 (10-137)||(56000365-56000492)
chr4 (9-142)||(34438483-34438615)
chr4 (109-169)||(36604586-36604646)
chr4 (18-118)||(47668527-47668627)
chr4 (35-137)||(38555187-38555289)
chr4 (98-208)||(52980150-52980260)
chr4 (24-137)||(3533519-3533632)
chr4 (90-166)||(7707751-7707827)
chr4 (23-134)||(17494218-17494329)
chr4 (9-50)||(5688635-5688676)
chr4 (9-50)||(34439658-34439699)
chr4 (90-150)||(1794574-1794634)
chr4 (10-129)||(28102154-28102273)
chr4 (15-57)||(44159168-44159210)
chr4 (9-50)||(26788599-26788640)
chr4 (9-50)||(33377362-33377403)
chr4 (9-49)||(5687252-5687292)
chr4 (9-49)||(33376295-33376335)
[»] scaffold0098 (2 HSPs)
scaffold0098 (9-208)||(40985-41184)
scaffold0098 (9-50)||(42344-42385)
[»] scaffold0084 (1 HSPs)
scaffold0084 (32-208)||(13044-13220)
[»] scaffold0290 (1 HSPs)
scaffold0290 (9-147)||(9379-9517)
[»] chr7 (23 HSPs)
chr7 (33-186)||(24494911-24495066)
chr7 (23-153)||(14108966-14109096)
chr7 (23-153)||(14418923-14419053)
chr7 (10-153)||(4167529-4167672)
chr7 (9-153)||(38406095-38406238)
chr7 (9-129)||(10256200-10256320)
chr7 (9-161)||(26406202-26406354)
chr7 (86-186)||(35315099-35315199)
chr7 (23-149)||(131898-132024)
chr7 (31-137)||(25154847-25154953)
chr7 (9-115)||(46458646-46458752)
chr7 (15-78)||(4857284-4857347)
chr7 (52-182)||(19848700-19848830)
chr7 (9-55)||(43936133-43936179)
chr7 (9-80)||(27899182-27899253)
chr7 (52-182)||(18801335-18801465)
chr7 (9-71)||(35315199-35315261)
chr7 (10-84)||(43930397-43930471)
chr7 (10-55)||(14206751-14206796)
chr7 (10-55)||(14215441-14215486)
chr7 (9-137)||(45719692-45719820)
chr7 (9-50)||(19278430-19278471)
chr7 (29-137)||(35484222-35484329)
[»] scaffold0015 (1 HSPs)
scaffold0015 (32-150)||(207696-207814)
[»] chr6 (12 HSPs)
chr6 (15-182)||(18139352-18139520)
chr6 (9-115)||(14328707-14328813)
chr6 (9-115)||(14421717-14421823)
chr6 (9-181)||(33801884-33802056)
chr6 (9-137)||(293551-293679)
chr6 (15-152)||(13507068-13507204)
chr6 (9-137)||(27440086-27440214)
chr6 (128-208)||(34084074-34084154)
chr6 (22-130)||(9927695-9927802)
chr6 (26-139)||(2130877-2130990)
chr6 (9-49)||(22299902-22299942)
chr6 (24-146)||(16268633-16268755)
[»] scaffold0025 (1 HSPs)
scaffold0025 (10-152)||(56595-56738)
[»] scaffold0122 (1 HSPs)
scaffold0122 (23-137)||(16036-16150)
[»] scaffold0045 (1 HSPs)
scaffold0045 (23-137)||(77090-77206)
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-137)||(47147-47275)
[»] scaffold0128 (1 HSPs)
scaffold0128 (88-142)||(22139-22193)
[»] scaffold2071 (1 HSPs)
scaffold2071 (90-150)||(576-636)
[»] scaffold0166 (1 HSPs)
scaffold0166 (73-129)||(4117-4173)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 12852963 - 12853164
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12852963 cataaatcttctatcgtttactattttggtcatctccgttagattttaacatcaaaaatctaaggtgaaccatatttaaaggtggttcaccatagaccgt 12853062  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||  ||| |||||||||||||||    
T  12853063 attaaatttttgaattttaaccatttgatttattctttaaaagaggaccattgaattatgtagagtctattgtactttcctgtcaaccactaacacctaa 12853162  T
Q  209 ca 210  Q
    ||    
T  12853163 ca 12853164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 59 - 210
Target Start/End: Complemental strand, 6708968 - 6708817
Alignment:
Q  59 atcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaagagaaccg 158  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||    
T  6708968 atcaaaagtctgaggtgaaccatatttaaaggtggttcaccataaaccgtattaaattttctaattttaaccatttgatttattctttaaaaaaggaccg 6708869  T
Q  159 ttgaattatgtatggtctattgtactttctagtctaccactaacacctaaca 210  Q
    |||||||||||| ||||||||| ||||||  ||  |||||||||||||||||    
T  6708868 ttgaattatgtagggtctattgcactttcctgtgaaccactaacacctaaca 6708817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 23177751 - 23177950
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| ||||||||| |||||||||| ||||||||| |||| |||||| |||||||||||||||| ||||||||| |||| | |    
T  23177751 cataaatcttctgccgtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatctt 23177850  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||||| |||||||||||||||||||| ||||||||| | | |||||||||||||||  |||||||||||||||   ||  |||||||||||||||    
T  23177851 attaaattttctaattttaaccatttgattttttctttaaatgcggaccgttgaattatgtcgggtctattgtactttactgtgaaccactaacacctaa 23177950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 23589008 - 23589207
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| ||||||||| |||||||||| ||||||||| |||| |||||| |||||||||||||||| ||||||||| |||| | |    
T  23589008 cataaatcttctgccgtttaccattttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatctt 23589107  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||||| |||||||||||||||||||| ||||||||| | | |||||||||||||||  |||||||||||||||   ||  |||||||||||||||    
T  23589108 attaaattttctaattttaaccatttgattttttctttaaatgcggaccgttgaattatgtcgggtctattgtactttactgtgaaccactaacacctaa 23589207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 3528266 - 3528130
Alignment:
Q  47 ttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttatt-ctt 145  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||    
T  3528266 ttagtttttaatagcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccagttgattttttcctt 3528167  T
Q  146 taaaagagaaccgttgaattatgtatggtctattgta 182  Q
    |||||||| ||| |||||||||||| ||| |||||||    
T  3528166 taaaagaggaccattgaattatgtagggtgtattgta 3528130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 14714592 - 14714768
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||  || |||||| ||||||||||  |||||    
T  14714592 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatacgccttattaatttttttaattgcaacca 14714691  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||| ||||||||||||  |||||||||| |||||  |||||||||| |||   ||  |||||||||||||||    
T  14714692 tttgattttttctttaaaagatgaccgttgaatcatgtagagtctattgtattttactgtgaaccactaacacctaa 14714768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 4512206 - 4512360
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| ||||| |||| |||||||||||||  |||||||||||||||||| ||| ||||| |||||||  || |||||| |||||||||||| ||||    
T  4512206 ttttggtcctctccattagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaatttttttaattttgacca 4512305  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||| ||||||||||||  |||||||||| ||||  |||||||| ||||||    
T  4512306 tttgattttttctttaaaagatgaccgttgaatcatgtggggtctattatacttt 4512360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 29424643 - 29424481
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    ||||| |||||| | |||||||| |||| ||||| |  |||||||||| ||||||| |||||||| |||||||||||| || |||||||| |||||||||    
T  29424643 ttctgccgtttattgttttggtcctctctgttagttactaacatcaaatgtctaagatgaaccatgtttaaaggtggtccatcatagaccttattaaatt 29424544  T
Q  117 ttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctatt 179  Q
    ||| |||||||||| |||||||| | ||||||||||| |  |||| || ||||| ||||||||    
T  29424543 tttaaattttaaccttttgatttttcctttaaaagaggattgttggatcatgtaaggtctatt 29424481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 7983691 - 7983561
Alignment:
Q  52 ttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaag 151  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||||||||| | |||||||||||| ||||| | || |||||||| |||||||||||    
T  7983691 ttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaatttttaaatttcatccttttgattttttctttaaaag 7983592  T
Q  152 agaaccgttgaattatgtatggtctattgta 182  Q
    ||    |||| || ||||| |||||||||||    
T  7983591 aggtttgttggatgatgtagggtctattgta 7983561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 26205114 - 26205220
Alignment:
Q  33 tttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccat 132  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||  || |||||| ||||| ||||||||||||    
T  26205114 tttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatacttaaaagtggtccaccatatgccttattaattttttaaattttaaccat 26205213  T
Q  133 ttgattt 139  Q
    |||||||    
T  26205214 ttgattt 26205220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 41296470 - 41296349
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| |||||||| |||| |||||| ||||| |||||| ||||||||| |||||| || | || ||||||||||||| ||||||     
T  41296470 ttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaatcatattaaaaggtggtgcaccatggatcttagtaaattttttaatattaacct 41296371  T
Q  132 tttgatttattctttaaaagag 153  Q
    |||||||| |||||||||||||    
T  41296370 tttgattttttctttaaaagag 41296349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 14509286 - 14509414
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||||||||||||| |||||||||  ||||||| | ||| ||||||||| |||||  |||| ||||||| ||||||||||| |    
T  14509286 cataaatcttctgtcgtttactattttggtcctctccgttaatttttaaccttaaatgtctaaggtaaaccaactttataggtggtccaccatagacctt 14509385  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    ||||||  ||||| |||||||| ||||||    
T  14509386 attaaaccttttatttttaaccgtttgat 14509414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 21010514 - 21010338
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||| ||||| | ||||||||||| |||||| ||||||| ||||||||||||||  | |||| ||| |||||||||||| ||||||||||     
T  21010514 ttttggtcctctctgttagttgttaacatcaaatgtctaatgtgaaccgtatttaaaggtggtctatcataaaccttattaaatttttaaattttaaccc 21010415  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||| |||| ||||| |||||| ||  |||| || | ||| ||||||||||| ||| |  |  |||||||||||||||    
T  21010414 tttaattttttcttaaaaagataattgttggatcaggtagggtctattgtattttattatgaaccactaacacctaa 21010338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 3532270 - 3532412
Alignment:
Q  8 acataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccg 107  Q
    |||||| |||| |||| ||||||||||| |||||||| |||   ||||||||| ||| || |||||||||||||||||||||||||| |||||||  |      
T  3532270 acataagtcttttgtcatttactattttagtcatctctgttgatttttaacattaaatgtttaaggtgaaccatatttaaaggtggtccaccatatgcat 3532369  T
Q  108 tattaaattttttaattttaaccatttgatttattctttaaaa 150  Q
    || ||||   ||| |||||||||||||||||| ||||||||||    
T  3532370 tactaaaaaattttattttaaccatttgattttttctttaaaa 3532412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 8537097 - 8537217
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    ||||||||||  |||||||||||||||||||||| ||||||| | ||| ||||||| || ||||  |||  | ||||||||||||||||  |||||||      
T  8537097 ttctgtcgttatctattttggtcatctccgttagtttttaaccttaaatgtctaagatgtaccaactttttaagtggttcaccatagactttattaaaaa 8537196  T
Q  117 ttttaattttaaccatttgat 137  Q
     ||||||||||||||||||||    
T  8537197 atttaattttaaccatttgat 8537217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 25570893 - 25570790
Alignment:
Q  25 tttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaatt 124  Q
    ||||||||||| ||| | |||||||| ||||||  | ||| |||||||||||||||  |||| ||||||| ||||||||||| |||||||| ||||| ||    
T  25570893 tttactattttagtcctttccgttagtttttaaacttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaatattttattt 25570794  T
Q  125 ttaa 128  Q
    ||||    
T  25570793 ttaa 25570790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 4829542 - 4829672
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||| |||||||||||||||||||| |||| |||||  |||||| | |||  |||||||| |||||  |||| ||||||| |||||||||||      
T  4829542 cataaatcttatgtcgtttactattttggtcctctctgttagtgtttaaccttaaatatctaaggtaaaccaactttataggtggtccaccatagacctc 4829641  T
Q  109 attaaattttttaattttaaccatttgattt 139  Q
    || ||  ||| ||||| ||||||||||||||    
T  4829642 ataaatctttctaattctaaccatttgattt 4829672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 37869079 - 37868973
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||||||||||  |||||||| |||||||| | ||||||| | ||| ||||||||||| |||  |||| ||||||| ||| ||||||| |    
T  37869079 cataagtcttctgtcgtttacctttttggtcttctccgtttgtttttaaccttaaatgtctaaggtgagccaactttataggtggtccacaatagacctt 37868980  T
Q  109 attaaat 115  Q
    |||||||    
T  37868979 attaaat 37868973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 45047447 - 45047511
Alignment:
Q  37 gtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccat 101  Q
    ||||| |||||||  |||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  45047447 gtcatttccgttaatttttaatatcaaatgtctaaggtgaaccatatttaaaggtggtccaccat 45047511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 10367316 - 10367422
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| |||||||  |||| ||| |||||||| | ||||||| | ||| |||||||||||||||  |||| ||||||| ||| ||||||| |    
T  10367316 cataagtcttctgccgtttacctttttagtcgtctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagacctt 10367415  T
Q  109 attaaat 115  Q
    |||||||    
T  10367416 attaaat 10367422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 35799613 - 35799730
Alignment:
Q  33 tttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccat 132  Q
    ||||||| |||||||||| ||||||| | ||| |||||||||||| ||  |||| | |||||  |||||||||  |||||||| || ||||||||||| |    
T  35799613 tttggtcctctccgttagcttttaaccttaaatgtctaaggtgaatcaactttataagtggtctaccatagactttattaaatgttataattttaaccgt 35799712  T
Q  133 ttgatttattctttaaaa 150  Q
    ||||| | || |||||||    
T  35799713 ttgatcttttttttaaaa 35799730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 28109900 - 28109780
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    |||||| |||||| ||||||||| |||||||||  ||||||| | ||| |||||||||||||||  |||  ||||||| |||||| || | ||| || |     
T  28109900 ttctgtagtttaccattttggtcctctccgttattttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtccaccatggatcttataaattc 28109801  T
Q  117 ttttaattttaaccatttgat 137  Q
     ||||||||||||| ||||||    
T  28109800 atttaattttaaccctttgat 28109780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 7037043 - 7037185
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| ||||||||||| ||||||   ||||||| | |||  ||||||||||| ||  |||| ||||| | |||| || ||| |    
T  7037043 cataagtcttctgccgtttaccattttggtcatttccgtttatttttaaccttaaatatctaaggtgaatcaactttataggtgatccaccgtaaacctt 7037142  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaag 151  Q
    ||||||| ||| | |||||||| |||||| | || ||||||||    
T  7037143 attaaatctttcatttttaaccgtttgatcttttttttaaaag 7037185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 40174803 - 40174757
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||| |||||||| ||||||||||||||||||||||||||| ||||    
T  40174803 cataaatcttctgttgtttactattttggtcatctccgttagttttt 40174757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 12959743 - 12959638
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgta 109  Q
    |||| ||||||| |||||||  ||||| || |||||||| |  |||||| | ||| |||||||||||||||  |||| ||||||| ||| ||||||| ||    
T  12959743 ataaatcttctgccgtttacctttttgatcctctccgtttgtctttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagacctta 12959644  T
Q  110 ttaaat 115  Q
    ||||||    
T  12959643 ttaaat 12959638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 42028997 - 42028956
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  42028997 cataattcttctgtcgcttactattttggtcttctccgttag 42028956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 21012113 - 21012073
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  21012113 tcttccgtcgtttactattttggtcatctccgttagttttt 21012073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 15650524 - 15650559
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttag 50  Q
    |||| |||||||||||||||||||||||||||||||    
T  15650524 tcttatgtcgtttactattttggtcatctccgttag 15650559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 7490219 - 7490165
Alignment:
Q  24 gtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaac 78  Q
    |||||||||||||||| | |||||||| ||||||| | ||| |||||||||||||    
T  7490219 gtttactattttggtcttatccgttagtttttaaccttaaatgtctaaggtgaac 7490165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 23178921 - 23178875
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||| ||||| |||||||| ||||||||||||||||||||| ||||    
T  23178921 cataaatcttcagtcgtttattattttggtcatctccgttagttttt 23178875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 23590178 - 23590132
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||| ||||| |||||||| ||||||||||||||||||||| ||||    
T  23590178 cataaatcttcagtcgtttattattttggtcatctccgttagttttt 23590132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 34512973 - 34513022
Alignment:
Q  90 gtggttcaccatagaccgtattaaattttttaattttaaccatttgattt 139  Q
    ||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  34512973 gtggtccaccatataccttattaaattttttaatttaaactatttgattt 34513022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 15850678 - 15850571
Alignment:
Q  29 ctattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaa 128  Q
    |||||||||||  || |||||| |||||||   ||| |||||||||||||||   ||| ||||||| ||||||||| | || || | |||||||||||||    
T  15850678 ctattttggtccacttcgttagtttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccatagatcttaataga-tttttaattttaa 15850580  T
Q  129 ccatttgat 137  Q
    || ||||||    
T  15850579 ccctttgat 15850571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 11219513 - 11219708
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  11219513 tcttctgccgtttactattttggtcatctccgttagattttaacatcaaaattctaaggtgaaccatatttaaaggtggttcaccatagatcgtattaaa 11219612  T
Q  115 ttttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaaca 210  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||  ||  |||||||||||||||||    
T  11219613 ttttttaattttaaccatttgattttttctttaaaagaggaccgttgaattatgtagggtctattgtactttcctgtgaaccactaacacctaaca 11219708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 32979188 - 32979364
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32979188 ttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 32979287  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||||||| |||||||||||||  || ||||||||||||| ||| ||||||||||| | ||  | |||||||||||||    
T  32979288 tttgattgattctttaaaagatgactgttgaattatgtagggtatattgtactttattgtaaatcactaacacctaa 32979364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 17350118 - 17349942
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||  || || |||||||||||||||||||||    
T  17350118 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaattttttaattttaacca 17350019  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||| ||||||||||||| |||||||||| ||||| ||||||||| ||||| | ||  |||||||||||||||    
T  17350018 tttgattttttctttaaaagaggaccgttgaatcatgtagggtctattgaactttattgtgaaccactaacacctaa 17349942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 39133100 - 39133293
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    |||||| |||||  || |||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||  || || ||||    
T  39133100 tcttctctcgttacctcttttggtcctctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaa 39133199  T
Q  115 ttttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||||||||||||||||||||||||| ||||||||||||| || ||||||| ||||| ||||||||||||||| | ||  |||||||||||||||    
T  39133200 ttttttaattttaaccatttgattttttctttaaaagaggacagttgaatcatgtaaggtctattgtactttattgtgaaccactaacacctaa 39133293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 53808395 - 53808594
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||| |||||||||||||||||||||||||| |||| |||||||||||||  ||||||||||| ||||| |||||||||| ||||||| ||| |    
T  53808395 cataaatcttatgtcgtttactattttggtcatctccattagtttttaacatcaaatttctaaggtgaatcatatctaaaggtggtccaccataaacctt 53808494  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||| ||||| || ||||| | ||||||||| |||   ||  |||||||||||||||    
T  53808495 attaaatttttaaattttaaccctttgattttttctttaaaagagaatcgttggatcatgtaggatctattgtattttactgtgaaccactaacacctaa 53808594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 7483541 - 7483387
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||| ||| ||||  |||||||  || |||||| |||||||||||||||||    
T  7483541 ttttggtcatctccgttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggcccaccatatgccttattaatttttttaattttaacca 7483442  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||| ||||||||||||| |||||||||| ||||  |||||||| ||||||    
T  7483441 tttgattttttctttaaaagaggaccgttgaatcatgtggggtctattatacttt 7483387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 34903024 - 34902889
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    |||||||||| ||| ||||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||||| |||||| |||| || ||||||    
T  34903024 ttctgtcgtt-actcttttggtcatctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaatt 34902926  T
Q  117 ttttaattttaaccatttgatttattctttaaaagag 153  Q
    |||||||||||||| |||||||| ||| |||||||||    
T  34902925 ttttaattttaaccttttgattttttcattaaaagag 34902889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 8371297 - 8371496
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||  |||||||||||||||| |||||||||| |||||||||||||  ||||| | ||||| || ||| ||||||| |||||| |||| |    
T  8371297 cataaatcttctgcagtttactattttggtcctctccgttagtttttaacatcaaatatctaaagcgaaccgtacttagaggtggtccaccatggacctt 8371396  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    | |||||||||||||||||||| |||||||| ||||||||||||| |  |||| || || ||| |||||||||| | | | ||  |||||||||||||||    
T  8371397 agtaaattttttaattttaaccctttgattttttctttaaaagaggattgttggatcatatatagtctattgtattctattgtaaaccactaacacctaa 8371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 47765521 - 47765689
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    ||||| || ||||| | ||||||||||||||||||| |||||||||||||  ||| |||||||||||  |||||| |||| ||||||||||| |||| ||    
T  47765521 tcttccgttgtttattgttttggtcatctccgttagtttttaacatcaaatatcttaggtgaaccattgttaaagatggtccaccatagaccttattgaa 47765620  T
Q  115 ttttttaattttaaccatttga-tttattctttaaaagagaaccgttgaattatgtatggtctattgta 182  Q
    ||||| |||||||||| ||||| ||| ||||||||||||| |  |||| || ||||| |||||||||||    
T  47765621 tttttaaattttaaccttttgatttttttctttaaaagaggattgttggatcatgtagggtctattgta 47765689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 23559896 - 23560015
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||| | ||  ||||||| |||||||  |||| ||||||| ||||||||| | |    
T  23559896 cataattcttctgtcgtttactattttggtcctctccgttagtttttaaccttaattgtctaagatgaaccaactttataggtggtccaccatagatctt 23559995  T
Q  109 attaaattttttaattttaa 128  Q
    ||||||| ||||| ||||||    
T  23559996 attaaatcttttatttttaa 23560015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 12062408 - 12062293
Alignment:
Q  24 gtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaat 123  Q
    |||||||||||||||||| ||| |||| ||||||| | ||| |||||||||||||||  |||| ||||| | ||||||| ||| |||||||| || || |    
T  12062408 gtttactattttggtcatttccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtgatccaccatataccttattaaatcttgtatt 12062309  T
Q  124 tttaaccatttgattt 139  Q
    ||||||||||||||||    
T  12062308 tttaaccatttgattt 12062293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 25583191 - 25583348
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||||||||||||| |||| ||||  ||||||| | ||| |||||||| |||| ||| ||||||||| | |||||||| || |    
T  25583191 cataagtcttctgccgtttactattttggtcctctctgttaatttttaaccttaaatgtctaaggcgaactata-ttaaaggtgctccaccataggcctt 25583289  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattat 167  Q
    || || |  ||||||||||||  |||||| | || || ||||||||||||||| |||||    
T  25583290 ataaattcatttaattttaactttttgatatttttttaaaaagagaaccgttggattat 25583348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 35174421 - 35174311
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||| |||||||||||||||||||| || ||||  ||||||| | |||||||||||||||||||  |||| |||| || ||| | ||||| |    
T  35174421 cataactcttctatcgtttactattttggtcatttctgttaatttttaaccttaaaagtctaaggtgaaccaactttataggtagtccacgagagacctt 35174322  T
Q  109 attaaattttt 119  Q
    |||||||||||    
T  35174321 attaaattttt 35174311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 43346486 - 43346361
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||  ||||||||||| | |||  | |||||||   ||| |||||||||| ||||   ||| ||||||| ||||||||||| |    
T  43346486 cataactcttctgtcgtttatcattttggtcattttcgtctgtttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctt 43346387  T
Q  109 attaaattttttaattttaaccattt 134  Q
    | ||||||||||||||||||||||||    
T  43346386 actaaattttttaattttaaccattt 43346361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 21128002 - 21128130
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| ||||||||||| |||||  | |||||||   ||| |||||||||| ||||   ||| ||||||| ||||||||||| |    
T  21128002 cataactcttctgccgtttaccattttggtcatttccgtctgtttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctt 21128101  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    |  || |||||||||||||||||||||||    
T  21128102 acaaagttttttaattttaaccatttgat 21128130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 31638218 - 31638355
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagt--ctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaac 129  Q
    ||||| || |||||| ||| |||||||||||||  |  |||||||||||||||||||||||||||  ||||||  || || |||||||||||||||||      
T  31638218 ttttgatcctctccgctagtttttaacatcaaatatatctaaggtgaaccatatttaaaggtggtctaccatacgccttactaaattttttaatttta-- 31638315  T
Q  130 catttgatttattctttaaaagagaaccgttgaattatgta 170  Q
      |||||||| ||||||||||||  || ||||||| |||||    
T  31638316 -ctttgattttttctttaaaagaagacagttgaatcatgta 31638355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 7483328 - 7483255
Alignment:
Q  113 aattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    ||||||||||||||| ||||||||||| ||  ||||||||| |||||||||| ||||  |||||||| ||||||    
T  7483328 aattttttaattttatccatttgatttttttgttaaaagaggaccgttgaatcatgtggggtctattatacttt 7483255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 19622106 - 19622179
Alignment:
Q  33 tttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagacc 106  Q
    ||||||| |||||||||| ||| ||||||||| || |||||||||| || |||||||||||| |||| ||||||    
T  19622106 tttggtcctctccgttagttttcaacatcaaatgtttaaggtgaactatgtttaaaggtggtccaccgtagacc 19622179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 48254929 - 48254800
Alignment:
Q  8 acataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccg 107  Q
    |||||| ||||||| ||||||| ||||| ||  | |||||   |||||||||| ||| |||||||||| ||||   ||| ||||||| ||||||| |||     
T  48254929 acataactcttctgccgtttaccattttagttttttccgtctaattttaacattaaatgtctaaggtggaccaacattataggtggtccaccataaacct 48254830  T
Q  108 tattaaattttttaattttaaccatttgat 137  Q
    || ||| ||||||||||||||||| |||||    
T  48254829 tactaagttttttaattttaaccacttgat 48254800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 54654005 - 54653964
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  54654005 cataattcttctgtcgtttactattttggtcctctccgttag 54653964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 48867455 - 48867344
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    ||||||||| | ||||| | || ||||| ||||||| | ||| |||||||||||||||  |||  |||||||  |||||||||  ||||||| ||| |||    
T  48867455 cgtttactaatgtggtcctttctgttagtttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaaatttgtaa 48867356  T
Q  123 ttttaaccattt 134  Q
    ||||||||||||    
T  48867355 ttttaaccattt 48867344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 20314713 - 20314647
Alignment:
Q  96 caccatagaccgtattaaattttttaattttaaccatttgatttattcttt-aaaagagaaccgttg 161  Q
    ||||||||||| |||||| || |||||||| |||||||||||||||| ||| ||||||| |||||||    
T  20314713 caccatagaccttattaatttatttaatttaaaccatttgatttattttttcaaaagaggaccgttg 20314647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 25585872 - 25585826
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  25585872 cataaatcttctgtcgtttactattttagtcatctccgttagttttt 25585826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 49333060 - 49333189
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||| |||| |||||| ||| ||| |||||| ||||| |||| || | ||| |||||||||||| ||  ||||  |||||| ||||||||||| |    
T  49333060 cataactctactgttgtttaccattctggccatctcggttagtttttcaccttaaacgtctaaggtgaatcaactttatgggtggtccaccatagacctt 49333159  T
Q  109 attaaattttttaattttaaccatttgattt 139  Q
    ||| ||| ||||| |||||||| ||||||||    
T  49333160 att-aatcttttatttttaaccgtttgattt 49333189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 32980490 - 32980445
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||    
T  32980490 ataaatcttctgccgtttactattttggtcatctccgttagttttt 32980445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 51825660 - 51825619
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  51825660 cataaatcttctgtcgtttactattttggtcatatccgttag 51825619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 5123294 - 5123244
Alignment:
Q  97 accatagaccgtattaaattttttaattttaaccatttgatttattctttaa 148  Q
    |||||||||| |||||| ||||||||||||||||||||||| |||| |||||    
T  5123294 accatagaccttattaa-ttttttaattttaaccatttgatctattttttaa 5123244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 43101971 - 43102010
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtt 48  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  43101971 cataattcttctgtcgcttactattttgatcatctccgtt 43102010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 20336606 - 20336540
Alignment:
Q  96 caccatagaccgtattaaattttttaattttaaccatttgattta-ttctttaaaagagaaccgttg 161  Q
    ||||||||||| |||||| || |||||||| |||||||  ||||| || ||||||||||||||||||    
T  20336606 caccatagaccttattaatttatttaatttaaaccattcaatttatttttttaaaagagaaccgttg 20336540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 29536791 - 29536837
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||| |||||| |||||||||||||||||| |||||||||| ||||    
T  29536791 cataaatcttctttcgtttactattttggtcctctccgttagctttt 29536837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 2124106 - 2124147
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| |||| || ||||||||||||||||||||||||||||    
T  2124106 cataaatcttatgccgtttactattttggtcatctccgttag 2124147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 42685008 - 42685097
Alignment:
Q  61 caaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaa 150  Q
    |||| ||||| |||||||||   ||||  ||||| ||||||| ||| |||||||||||||||||| |||| |||||| | || |||||||    
T  42685008 caaatgtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaaccgtttgatctgttttttaaaa 42685097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 41264607 - 41264531
Alignment:
Q  90 gtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaatta 166  Q
    ||||| ||||||||| | |||||| | |||||||||  ||| |||||||| || || ||||||||||| ||||||||    
T  41264607 gtggtacaccatagatcctattaattattttaatttcgaccgtttgatttttttttaaaaagagaaccattgaatta 41264531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 47808145 - 47808105
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| ||||||||||||| ||||||||||| |||||||||    
T  47808145 cataaatcttctgtcgtttgctattttggtcctctccgtta 47808105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 26056186 - 26055987
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  26056186 cataaatcttttgtcgtttactattttggtcctctccgttagattttaacatcaaaagtctaaagtgaaccatatttaaaggtggttcaccataggccgt 26056087  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  ||  |||||||||||||||    
T  26056086 attaaattttttaattttaaccatttgatttattctttaaaagaggaccgttgaattatgtagggtctattgtactttcctgtgaaccactaacacctaa 26055987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 50678463 - 50678616
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50678463 ttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa-tttttaattttaacca 50678561  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||| ||||||||||||| || |||||||||  || |||||||||||||||    
T  50678562 tttgattttttctttaaaagaggactgttgaattacatagggtctattgtacttt 50678616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 30551605 - 30551429
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||||||| |||||| |||| || ||||||||||||||||||||     
T  30551605 ttttggtcatctccgttagtttttagcatcaaatgtctaaagtgaaccatattaaaaggtggtgcaccatggaccttagtaaattttttaattttaacct 30551506  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||| ||||||||||||| |  |||| || ||||| ||||||||||| |||   ||  |||||||||||||||    
T  30551505 tttgattttttctttaaaagaggattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaa 30551429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 37624586 - 37624410
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||||||| |||||| |||||||||||| |||||| || |||||| |||| || ||||||||||||||||||||     
T  37624586 ttttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatattaaaaggttgtgcaccatggaccttagtaaattttttaattttaacct 37624487  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||| ||||||||||||| |  ||||||| ||||| ||||||||||| |||   ||  |||||||||||||||    
T  37624486 tttgattttttctttaaaagaggattgttgaatcatgtagggtctattgtattttagtgtgaaccactaacacctaa 37624410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 51218980 - 51218805
Alignment:
Q  34 ttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatt 133  Q
    |||||| |||||||||| ||||||||||||| |||||| ||||||||||||||||| |||| |||||||  || ||||||||||||||||||||| ||||    
T  51218980 ttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatatttaaagatggtccaccatatgccttattaaattttttaattttaatcatt 51218881  T
Q  134 tgattta-ttctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||||||| ||| ||||||||| || ||||||| ||||  ||||||||||||||||  ||  |||||| ||||||||    
T  51218880 tgatttatttcattaaaagaggactgttgaatcatgtggggtctattgtactttcctgtgaaccactcacacctaa 51218805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 14764306 - 14764505
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||||||||||| |||| |||||||| ||||| ||||||||| ||| || ||||||||||| |||||||||||||| |||||||  || |    
T  14764306 cataagtcttctgtcgtttactgttttagtcatctctgttagtttttaacattaaatgtttaaggtgaaccttatttaaaggtggtccaccatacgccat 14764405  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    | |||||||||| |||||||||||||||||| |||||||||| | |   ||| ||| ||||| ||||||||| |||||   ||  |||||||||||||||    
T  14764406 actaaatttttttattttaaccatttgattttttctttaaaaaatagttgttaaatcatgtagggtctattgcactttactgtgaaccactaacacctaa 14764505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 52743004 - 52742869
Alignment:
Q  20 tgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttt 119  Q
    ||||||||||| || ||||| |||||||||| ||||||||||||| || ||||||||||||| |||||||||||| |||||||||||  |||| ||||||    
T  52743004 tgtcgtttactgttatggtcctctccgttagtttttaacatcaaatgtttaaggtgaaccatgtttaaaggtggtacaccatagacctaattacattttt 52742905  T
Q  120 taattttaaccatttgatttattctttaaaagagaa 155  Q
     |||||||||| |||||||| |||||||||||||||    
T  52742904 aaattttaaccttttgattttttctttaaaagagaa 52742869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 9633866 - 9634025
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    |||||||  ||||| || |||||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||    
T  9633866 cgtttacagttttgatcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaatttttaaa 9633965  T
Q  123 ttttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgta 182  Q
    |||| ||| |||||||| ||||||| ||||  |  |||| |||||||| ||||| |||||    
T  9633966 ttttgaccctttgattttttctttagaagaagatagttggattatgtagggtcttttgta 9634025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 27689368 - 27689563
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaa--- 113  Q
    ||||||||||  || |||||||| |||||||||| |||||||| |||| |||||| |||||||||||||||||||||| || ||| |||| ||||||       
T  27689368 ttctgtcgttacctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtccatcatggaccttattaattt 27689467  T
Q  114 -attttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
      |||||||||||||||| |||||||| |||||||||||| ||  |||| || ||||| ||||||||||| |||   ||  |||||||||||||||    
T  27689468 ttttttttaattttaaccttttgattttttctttaaaagataattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaa 27689563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 23082157 - 23081966
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    ||||||||||  || |||||||| | |||||||| |||||||| ||||  ||||| |||||||||||||||||||||| |||||| |||| || ||||||    
T  23082157 ttctgtcgttgcctcttttggtcctttccgttagtttttaacaccaaatatctaaagtgaaccatatttaaaggtggtccaccatggaccttaataaatt 23082058  T
Q  117 ttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||||||||  |||||||| || |||||||| | |  |||| || ||||| ||||||||||| |||   ||  |||||||||||||||    
T  23082057 ttttaattttaacattttgattttttttttaaaagtggattgttggataatgtaaggtctattgtattttagtgtaaaccactaacacctaa 23081966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 49141535 - 49141414
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||||| ||||| ||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| || | ||||||||||| |    
T  49141535 cataatttttctgccgtttaccattttagtcatctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaagttgttccaccatagacctt 49141436  T
Q  109 attaaattttttaattttaacc 130  Q
    || || |  |||||||||||||    
T  49141435 ataaattcatttaattttaacc 49141414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 22766851 - 22766729
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    ||||||||||  || |||||||| | |||||||| |||||||| ||||  ||||| |||||||||||||||||||||| |||||| |||| |  ||||||    
T  22766851 ttctgtcgttgcctcttttggtcctttccgttagtttttaacaccaaatatctaaagtgaaccatatttaaaggtggtccaccatggaccttcataaatt 22766752  T
Q  117 ttttaattttaaccatttgattt 139  Q
    |||||||||||||| ||||||||    
T  22766751 ttttaattttaaccttttgattt 22766729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 44977322 - 44977408
Alignment:
Q  33 tttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttt 119  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| || ||| ||||||||||||    
T  44977322 tttggtcatctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccgtaaaccttattaaattttt 44977408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 51726883 - 51726766
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||||||||| ||| || ||||||| ||||||| | ||| |||||||||||||||  |||| ||||||| ||||||||||| |    
T  51726883 cataaatcttctgtcgtttactattttagtcctcaccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagacctt 51726784  T
Q  109 attaaattttttaatttt 126  Q
    ||||||| ||||| ||||    
T  51726783 attaaatcttttattttt 51726766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 21277071 - 21277188
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| |||||||||||||| || ||||| |||| |||| || | ||| |||||||||||||||  |||| ||||||| ||||||||||| |    
T  21277071 cataaatcttctgccgtttactattttgatcctctccattagtttttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagacctt 21277170  T
Q  109 attaaattttttaatttt 126  Q
    ||||||| ||||| ||||    
T  21277171 attaaatcttttattttt 21277188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 14169696 - 14169807
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||| |||||||||||||||||||| | || ||||| ||||||| | ||| |||||||||||||||  |||| ||||||  ||||||||||| |    
T  14169696 cataaatcttttgtcgtttactattttggtcttatctgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggcccaccatagacctt 14169795  T
Q  109 attaaatttttt 120  Q
    ||| ||| ||||    
T  14169796 attgaatctttt 14169807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 19466244 - 19466112
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||||||| ||||  |||||||||| ||||||| ||||| ||||| |||| || |   ||| || | || ||||||||||| |    
T  19466244 cataaatcttctgtcgtttactattgtggttctctccgttagtttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagacctt 19466145  T
Q  109 attaaattttttaattttaaccatttgatttatt 142  Q
    ||| ||||||||||||| | ||||||||| ||||    
T  19466144 att-aattttttaatttcagccatttgatctatt 19466112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 36509888 - 36510020
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||||||||||||  |||||||||| ||||||| ||||| ||||| |||| || |   ||| || |  | ||||||||||| |    
T  36509888 cataaatcttctgccgtttactattttggttctctccgttagtttttaacctcaaatgtctatggtggactaacattatagatattccaccatagacctt 36509987  T
Q  109 attaaattttttaattttaaccatttgatttatt 142  Q
    ||| ||||||||||||||| ||||||||| ||||    
T  36509988 att-aattttttaattttagccatttgatctatt 36510020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 36511370 - 36511329
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  36511370 cataaatcttctgtcgtttactattttggtcatctccgttag 36511329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 3978121 - 3978161
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  3978121 cataattcttctgtcgtttactattttggtcctctccgtta 3978161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 3979352 - 3979311
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  3979352 cataattcttctgccgtttactattttggtcctctccgttag 3979311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 8092689 - 8092782
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    ||||||||  ||||||| | ||||||||  |||||| | |||  ||||||||||||||  |||| ||||||| ||||||||||| |||||||||    
T  8092689 cgtttactgatttggtcctttccgttagtatttaaccttaaatatctaaggtgaaccaactttataggtggtccaccatagaccttattaaatt 8092782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 47411061 - 47411102
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  47411061 cataaatcttatgtcgtttactattttggtcatctccgttag 47411102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 13641334 - 13641374
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  13641334 cataaatcttctgccgtttactattttggtcatctccgtta 13641374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 14071242 - 14071115
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||| ||||||||| | |||||| | ||||||| | ||| |||||  ||||| || ||||| | |||||  |||||||||| |    
T  14071242 cataagtcttctgtcgtttaccattttggtcctttccgtttgtttttaaccttaaatgtctattgtgaaaca-atttatatgtggtctaccatagacctt 14071144  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    |||||||  | || |||||||| ||||||    
T  14071143 attaaatcatatatttttaaccgtttgat 14071115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 40811403 - 40811457
Alignment:
Q  83 tttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgat 137  Q
    |||| ||||||| ||||||||||| |||||||| ||||| |||||||| ||||||    
T  40811403 tttataggtggtccaccatagaccttattaaatcttttatttttaaccgtttgat 40811457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 51300221 - 51300163
Alignment:
Q  84 ttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttatt 142  Q
    ||||| ||||| ||||||||||| |||||| ||| | ||||||||||||||||| ||||    
T  51300221 ttaaaagtggtccaccatagaccttattaattttatgaattttaaccatttgatatatt 51300163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 16218517 - 16218476
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| |||| ||||||||| |||||||||||||||||||||    
T  16218517 cataaatcttatgtcgtttaatattttggtcatctccgttag 16218476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 40811272 - 40811321
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaac 58  Q
    ||||| |||| || |||||| ||||||||||||||||||||| |||||||    
T  40811272 cataactcttttgccgtttattattttggtcatctccgttagtttttaac 40811321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 41872740 - 41872777
Alignment:
Q  93 gttcaccatagaccgtattaaattttttaattttaacc 130  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  41872740 gttcaccatagaccttattaaattttttaatttaaacc 41872777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 42246047 - 42246087
Alignment:
Q  88 aggtggttcaccatagaccgtattaaattttttaattttaac 129  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  42246047 aggtggtttaccatagacc-tattaaattttttaattttaac 42246087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 16217518 - 16217558
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    |||| |||| |||| ||||||||||||||||||||||||||    
T  16217518 ataaatcttatgtcatttactattttggtcatctccgttag 16217558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 52181344 - 52181304
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| |||| ||| ||||||||||||||||||||||||||    
T  52181344 cataaatcttatgttgtttactattttggtcatctccgtta 52181304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 18693775 - 18693951
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||  || |||||||| |||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  18693775 cataaatcttctgtcgttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatataaaggtggttcaccatagaccgt 18693874  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||    
T  18693875 attaaattttttaattttaatcatttgattt-ttctttaaaagaggaccgttgaattatgtatagtctattgtacttt 18693951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 21387714 - 21387891
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||  || |||||||| | || ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  21387714 cataaatcttctgccgttacctcttttggtcctgtctgttagtttttaacatcaaaactctaaggtgaaacatatttaaaggtggttcaccataggccgt 21387813  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||    
T  21387814 attaaattttttaattttaaccatttgattttttctttaaaagaggaccgttgaattatgtagggtctattgtacttt 21387891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 7426761 - 7426862
Alignment:
Q  52 ttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaag 151  Q
    ||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||| |||| |||||||| |||||||||||    
T  7426761 ttttaacatcaaatgtctaaggtgaatcatatttaaaggtggtccaccatagaccttattaaatttttaaatttcaaccttttgattttttctttaaaag 7426860  T
Q  152 ag 153  Q
    ||    
T  7426861 ag 7426862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 40058095 - 40058236
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| |||||||||||||||||||| ||||||  | ||| |||||||||||||||  |||| | || || ||||||||||| |    
T  40058095 cataactcttctgccgtttaccattttggtcatctccgttagtttttaatcttaaatgtctaaggtgaaccaactttataagtagtccaccatagacctt 40058194  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaa 150  Q
    ||||||| ||||| |||||||  |||||| | || |||||||    
T  40058195 attaaatcttttatttttaactgtttgatcttttttttaaaa 40058236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 2167553 - 2167424
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| |||||| |||||||||| |||| ||||| ||||||| | ||| |||||||||||||||  |||| || |||| ||||||||||| |    
T  2167553 cataaatcttctgccgtttattattttggtc-tctctgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccaccatagacctt 2167455  T
Q  109 attaaattttttaattttaaccatttgattt 139  Q
    ||||||| ||||| | |||||| ||||||||    
T  2167454 attaaatcttttattattaaccgtttgattt 2167424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 5383031 - 5383131
Alignment:
Q  21 gtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttt 120  Q
    |||||||||||||||| || |||||||||| ||||||| | ||| |||||||||||| ||  |||| ||||||| ||||||||||| |||||||| ||||    
T  5383031 gtcgtttactattttgatcctctccgttagtttttaaccttaaatgtctaaggtgaatcaactttataggtggtccaccatagaccttattaaatctttt 5383130  T
Q  121 a 121  Q
    |    
T  5383131 a 5383131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 15856610 - 15856738
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| ||||||||||| | |||| | |||||||   ||| |||||||||| ||||   ||| ||||||| ||||||||||| |    
T  15856610 cataactcttctgccgtttaccattttggtcattttcgtttgtttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagacctt 15856709  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    | ||| |||||||||||||| ||||||||    
T  15856710 actaagttttttaattttaatcatttgat 15856738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 32734208 - 32734328
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||||||||||||||| |||||||| ||||||  | |||  |||||||||||| |  || | || | || ||||||||||| |    
T  32734208 cataactcttctgtcgtttactattttggtcatttccgttagtttttaatcttaaatatctaaggtgaacaaccttaatagatagtccaccatagacctt 32734307  T
Q  109 attaaattttttaattttaac 129  Q
    ||||||| ||||| |||||||    
T  32734308 attaaatcttttatttttaac 32734328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 19525328 - 19525221
Alignment:
Q  8 acataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccg 107  Q
    |||||| ||||||| ||||||| ||||||||| |||||||| | ||||||| | |||  |||| |||||||||  |||| | ||||| |||||||||||     
T  19525328 acataagtcttctgccgtttaccattttggtcctctccgtttgtttttaaccttaaatttctatggtgaaccaactttatatgtggtccaccatagacct 19525229  T
Q  108 tattaaat 115  Q
    ||||||||    
T  19525228 tattaaat 19525221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 22819556 - 22819507
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaac 58  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |||||||    
T  22819556 cataactcttctgccgtttactattttggtcatctccgttagtttttaac 22819507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 30910904 - 30910980
Alignment:
Q  90 gtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaatta 166  Q
    ||||| ||||||||| | |||||| | ||||||||| |||| ||||| || ||||||||||||||||| ||||||||    
T  30910904 gtggtccaccatagatcctattaattattttaatttcaaccgtttgagtttttctttaaaagagaaccattgaatta 30910980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 223317 - 223431
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    ||||||||| | ||||| | ||| |||| ||||||  | ||| |||||||||||||||  |||  |||||||  |||||||||  |||||||||||||||    
T  223317 cgtttactaatgtggtcctttccattagtttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaa 223416  T
Q  123 ttttaaccatttgat 137  Q
    ||| |||| ||||||    
T  223417 tttaaaccgtttgat 223431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 42510191 - 42510257
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtg 75  Q
    ||||| ||||||| ||||||||||||||||  |||||||||| ||||||| ||||| ||||| ||||    
T  42510191 cataaatcttctgccgtttactattttggttctctccgttagtttttaacctcaaatgtctatggtg 42510257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 7345386 - 7345350
Alignment:
Q  52 ttttaacatcaaaagtctaaggtgaaccatatttaaa 88  Q
    |||||||||||||| ||||||||||||||||||||||    
T  7345386 ttttaacatcaaaactctaaggtgaaccatatttaaa 7345350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 38473594 - 38473554
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  38473594 cataaatcttctgtcgtttactattttggtcatttccgtta 38473554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 15857657 - 15857611
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||| |||| |||||||||| |||||||||||||||||||| ||||    
T  15857657 cataaatcttatgtcgtttaccattttggtcatctccgttagttttt 15857611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 42979526 - 42979564
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgtt 48  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  42979526 ataattcttctgccgtttactattttggtcctctccgtt 42979564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 38471366 - 38471495
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||  ||||||||||||||||  |||| ||||  ||||||| | ||| || ||||||||||||  |||| |||||||  |||||||||  |    
T  38471366 cataaatcttcttccgtttactattttggttctctctgttaatttttaaccttaaatgtttaaggtgaaccaactttataggtggtctaccatagacttt 38471465  T
Q  109 attaaat-tttttaattttaaccatttgat 137  Q
    ||||  | ||||| ||||||||| ||||||    
T  38471466 attatttattttttattttaaccgtttgat 38471495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 10084675 - 10084715
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| |||| |||||||||||||||||||| |||||||||    
T  10084675 cataaatcttttgtcgtttactattttggtcctctccgtta 10084715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 12830976 - 12830880
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagacc 106  Q
    |||| |||||||  |||||||||||||||| |||||||||  |||||||   |||  ||| ||||||||||   ||| ||||||| |||||||||||    
T  12830976 ataactcttctgctgtttactattttggtcctctccgttaatttttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacc 12830880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 12862956 - 12862860
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagacc 106  Q
    |||| |||||||  |||||||||||||||| |||||||||  |||||||   |||  ||| ||||||||||   ||| ||||||| |||||||||||    
T  12862956 ataactcttctgctgtttactattttggtcctctccgttaatttttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagacc 12862860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 22308754 - 22308694
Alignment:
Q  90 gtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaa 150  Q
    ||||| ||||||||||  |||||||||||||||| | ||||||||||| | || |||||||    
T  22308754 gtggtccaccatagacattattaaattttttaatgtaaaccatttgatctgttttttaaaa 22308694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 24761620 - 24761676
Alignment:
Q  73 gtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaac 129  Q
    ||||||||  |||| ||||||| ||||||| |||||||||||| ||||| |||||||    
T  24761620 gtgaaccaactttataggtggtccaccataaaccgtattaaatcttttatttttaac 24761676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 39917 - 39763
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39917 ttttggtcctctctgttagtttttaacatcaaaagtctaaggtgaatcatatttaaaggtggttcaccatggaccgtattaaattttttaattttaacca 39818  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||| ||||||||||||  ||| |||||||||||| |||||||||||||||    
T  39817 tttgattttttctttaaaagatgaccattgaattatgtagggtctattgtacttt 39763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 22203 - 22244
Alignment:
Q  8 acataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  22203 acataaatcttctgtcgtttactattttggtcatctccgtta 22244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 667 - 490
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||| |||| | |    
T  667 cataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatctt 568  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||| ||||||    
T  567 attaaattttctaattttaaccatttgattttttctttaaatgagaaccgttgaattatgtcgggtctattatacttt 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 607 - 784
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||| |||| | |    
T  607 cataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatctt 706  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||| ||||||    
T  707 attaaattttctaattttaaccatttgattttttctttaaatgagaaccgttgaattatgtcgggtctattatacttt 784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 37276282 - 37276110
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||| || |||||| ||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  37276282 cataaatcttttgccgtttattatattggtcctctctgttagtttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcactatagaccat 37276183  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgt 181  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||  |||||||||    
T  37276182 attaaattttttaattttaaccatttgattttttctttaaaagaggacctttgaattatgtaaagtctattgt 37276110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 36756140 - 36756309
Alignment:
Q  8 acataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccg 107  Q
    |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| ||||||||||||||||||||||||  ||     
T  36756140 acataaatcttatgtcgtttactattttggtcatctccgttagtttttaacatcaaatttctaaggtgaatcatatttaaaggtggttcaccataagcct 36756239  T
Q  108 tattaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtcta 177  Q
    |||||||||||| |||||||||| ||| |||| ||||||||||||||| ||||| || ||||| ||||||    
T  36756240 tattaaatttttaaattttaaccctttaattttttctttaaaagagaatcgttggatcatgtagggtcta 36756309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 13513520 - 13513674
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||||||| || |||| ||||||||||||||| ||||| ||||||| ||| |||||| |||||||||||||||||    
T  13513520 ttttggtcctctccgttagcttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaacca 13513619  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||| |||||||||| || |||||||||| ||||  |||||||||||||||    
T  13513620 tttgattttttctttaaaataggaccgttgaatcatgtgaggtctattgtacttt 13513674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 13603053 - 13603207
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||||||| || |||| ||||||||||||||| ||||| ||||||| ||| |||||| |||||||||||||||||    
T  13603053 ttttggtcctctccgttagcttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaacca 13603152  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||||||| |||||||||| || |||||||||| ||||  |||||||||||||||    
T  13603153 tttgattttttctttaaaataggaccgttgaatcatgtgaggtctattgtacttt 13603207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 21670164 - 21670318
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| |||||||||||||  |||||||||||||||||| ||| ||||| |||||||  || |||||| |||||||||||||||||    
T  21670164 ttttggtcttctccgttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaatttttttaattttaacca 21670263  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    |||| ||| ||||||||||||| |||||||||| ||||  |||||||| ||||||    
T  21670264 tttggttttttctttaaaagaggaccgttgaatcatgtggggtctattatacttt 21670318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 13363594 - 13363418
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| |||||||| |||| |||||| |||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||     
T  13363594 ttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaattttttaattttaacct 13363495  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||| |||| ||||||||||||| |  |||| || ||||| ||||||||||| |||   ||  |||||||||||||||    
T  13363494 tttaattttttctttaaaagaggattgttggatcatgtagggtctattgtatttttgtgtgaaccactaacacctaa 13363418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 44103321 - 44103134
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaa-atttttta 121  Q
    ||||| || |||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||| |||||||  || ||||||  |||||||    
T  44103321 cgtttcctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatatgccttattaatttttttta 44103222  T
Q  122 attttaaccatttga-tttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||||||||||||||| ||| ||| ||||||||  |||||||||| ||||  ||||||||||||||| | ||  |||||| ||||||||    
T  44103221 attttaaccatttgatttttttcattaaaagaagaccgttgaatcatgtggggtctattgtactttattgtgaaccactcacacctaa 44103134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 7486169 - 7486298
Alignment:
Q  24 gtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaat 123  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||| |||||| || || ||||||||||| |||||||||||| |||    
T  7486169 gtttactattttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatgtttaaatgttgtccaccatagaccttattaaatttttaaat 7486268  T
Q  124 tttaaccatttgatttattctttaaaagag 153  Q
    |||| || |||||||| |||||||||||||    
T  7486269 tttagccttttgattttttctttaaaagag 7486298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 10052204 - 10052354
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||||||||| |||| ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||| | ||||||||     
T  10052204 ttttggtcatctcctttagtttttaacattaaatgtctaagatgaaccatatttaaaggtggtccaccataaaccttattaaatttttaagttttaaccc 10052303  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgta 182  Q
    |||||||| ||||||||||||  |  |||| || ||||| |||||||||||    
T  10052304 tttgattttttctttaaaagatgattgttggatcatgtagggtctattgta 10052354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 21961923 - 21962041
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||||||| |||| ||||||||||| |||||||||||| |||||||  || || |||||||||||||||||||||    
T  21961923 ttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaattttttaattttaacca 21962022  T
Q  132 tttgatttattctttaaaa 150  Q
    |||||||| ||||||||||    
T  21962023 tttgattttttctttaaaa 21962041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 117125 - 117268
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||||||||| | |||||||| |||||||||| ||||||||||||| |||||||||||  ||| |||||||||||| ||||||||||| |    
T  117125 cataaatcttctgtcgtttattgttttggtcctctccgttagtttttaacatcaaatgtctaaggtgagtcatgtttaaaggtggtccaccatagacctt 117224  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagag 153  Q
    | |||| |||| ||||||| || |||||||| |||||| ||||||    
T  117225 actaaa-ttttaaattttagccttttgattttttctttgaaagag 117268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 13367089 - 13366961
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||||||||||||| |||||||||| ||||||| | ||| |||||||||||||||  |||| ||||||| ||||||||||| |    
T  13367089 cataaatcttctgccgtttactattttggtcctctccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagacctt 13366990  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    ||||||  ||||| |||||||| ||||||    
T  13366989 attaaaccttttatttttaaccgtttgat 13366961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 45541604 - 45541733
Alignment:
Q  52 ttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaag 151  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||  ||||||||||||||||||||||| ||||||||| || |||||| |    
T  45541604 ttttaacatcaaaagtctaaagtgaatcatatttaaag-tggttcaccatggaatgtattaaattttttaattttaacaatttgattt-ttttttaaatg 45541701  T
Q  152 agaaccgttgaattatgtatggtctattgtacttt 186  Q
       ||| |||||||||||| |||||||||||||||    
T  45541702 ---accattgaattatgtagggtctattgtacttt 45541733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 39546702 - 39546572
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    |||||||  ||||||||||||||||||| ||||||||||||| || |||| |||||||| |||||||||||| |||||| |||| || ||||    ||||    
T  39546702 cgtttaccgttttggtcatctccgttagtttttaacatcaaatgtttaagatgaaccatgtttaaaggtggtccaccatggaccttagtaaaaaaattaa 39546603  T
Q  123 ttttaaccatttgatttattctttaaaagag 153  Q
    |||||||| |||||||| || ||||||||||    
T  39546602 ttttaaccctttgattttttttttaaaagag 39546572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 36938758 - 36938851
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccata 102  Q
    ||||| ||||||| ||||||||||||||||| |||| ||||  |||||||||||||  ||||| ||||||||||||||||||||||||||||||    
T  36938758 cataaatcttctgccgtttactattttggtcttctctgttaatttttaacatcaaatatctaaagtgaaccatatttaaaggtggttcaccata 36938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 35944000 - 35944105
Alignment:
Q  24 gtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaat 123  Q
    ||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||  |||| ||||| | ||||||||| | |||||||| ||||| |    
T  35944000 gtttactattttggtcatctccgttagtttttaactttaaatgtctaaggtgaaccaactttataggtgatccaccatagatcttattaaatcttttatt 35944099  T
Q  124 tttaac 129  Q
    ||||||    
T  35944100 tttaac 35944105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 39325850 - 39325729
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||| |||||||| | ||| ||||||||||||| ||||||||||||| || ||||||||||||  | ||||  || || |||||||||||||||||||||    
T  39325850 ttttagtcatctctgctagtttttaacatcaaatgtctaaggtgaactatgtttaaaggtggtctatcatatgccttactaaattttttaattttaacca 39325751  T
Q  132 tttga-tttattctttaaaaga 152  Q
    ||||| ||| ||||||||||||    
T  39325750 tttgatttttttctttaaaaga 39325729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 21267233 - 21267339
Alignment:
Q  33 tttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccat 132  Q
    ||||||| |||||||||| |||||||||||||  ||||||||| |||||  || |||||||| ||||||| |||  ||||||||||| |||||||||| |    
T  21267233 tttggtcctctccgttagtttttaacatcaaatatctaaggtggaccatgattcaaggtggtccaccatatacctaattaaatttttaaattttaacctt 21267332  T
Q  133 ttgattt 139  Q
    |||||||    
T  21267333 ttgattt 21267339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 36070255 - 36070372
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||||||||||||| || |||||||  ||| || | ||| |||||||||||||||  |||| ||||||| ||||||||||| |    
T  36070255 cataaatcttctgccgtttactattttggtcctccccgttagtctttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagacctt 36070354  T
Q  109 attaaattttttaatttt 126  Q
    ||||||| ||||| ||||    
T  36070355 attaaatattttattttt 36070372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 8095429 - 8095553
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    |||| |||||||||||||||||||| | |||||||| ||||||  | ||| |||||||||||||||  |||| ||||| | ||||||| ||| |||||||    
T  8095429 tcttttgtcgtttactattttggtcctttccgttagtttttaatcttaaatgtctaaggtgaaccaactttataggtgatgcaccatataccttattaaa 8095528  T
Q  115 ttttttaattttaaccatttgattt 139  Q
    | || ||  ||||||||||||||||    
T  8095529 tcttgtatctttaaccatttgattt 8095553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 24069485 - 24069357
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| ||||||||| | |||||  | ||||||||  ||| |||||||||| ||||   ||| ||||||| ||||||||||| |    
T  24069485 cataactcttctgccgtttaccattttggtcctttccgtctgtttttaacactaaatgtctaaggtggaccaacattataggtggtccaccatagacctt 24069386  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    | ||| |||||||||||||||||||||||    
T  24069385 actaagttttttaattttaaccatttgat 24069357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 2421326 - 2421191
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    ||||||| |||||| |||||||||| |||  ||||| ||||||| | ||| |||||||||||||||  |||| || |||| || |||||||| |||||||    
T  2421326 tcttctgccgtttattattttggtcctctttgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatggtccatcatagaccttattaaa 2421227  T
Q  115 ttttttaattttaaccatttgat-ttattctttaaa 149  Q
    | ||||| |||||||| |||||| || |||||||||    
T  2421226 tcttttatttttaaccgtttgatctttttctttaaa 2421191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 20308682 - 20308801
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||||||||||||||| ||| |||  ||||||| | ||| |||||||||||||||  |||| || | || | ||||||||| |    
T  20308682 cataactcttctgtcgtttactattttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaactttatagatagtccgccatagacctt 20308781  T
Q  109 attaaattttttaattttaa 128  Q
    ||||||| ||||| ||||||    
T  20308782 attaaatcttttatttttaa 20308801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 21095315 - 21095434
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||||||||||||||| ||| |||  ||||||| | ||| |||||||||||||||  |||| || | || | ||||||||| |    
T  21095315 cataactcttctgtcgtttactattttggtcatttccattaatttttaaccttaaatgtctaaggtgaaccaactttatagatagtccgccatagacctt 21095414  T
Q  109 attaaattttttaattttaa 128  Q
    ||||||| ||||| ||||||    
T  21095415 attaaatcttttatttttaa 21095434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 44606231 - 44606344
Alignment:
Q  24 gtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaat 123  Q
    ||||| ||||||| || ||||| |||| ||||||| | ||| |||||||||||||||  |||| ||||||| ||||||||||| | |||||| ||||| |    
T  44606231 gtttattattttgatcctctccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttgttaaatcttttatt 44606330  T
Q  124 tttaaccatttgat 137  Q
    ||||||| ||||||    
T  44606331 tttaaccgtttgat 44606344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 34617212 - 34617106
Alignment:
Q  31 attttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 130  Q
    ||||||||||| ||||| || |||||||   ||| || ||||||| ||||   ||| ||||||| |||| |||||| || ||||||||||||||||||||    
T  34617212 attttggtcatttccgtcagtttttaaccctaaatgtataaggtggaccaacattacaggtggtccaccgtagaccttactaaattttttaattttaacc 34617113  T
Q  131 atttgat 137  Q
    |||||||    
T  34617112 atttgat 34617106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 7816127 - 7816000
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||||||||||| ||||  | ||||||||||| | |||  | ||||||||  ||| |||||||||| ||||   ||| ||||||| | ||||||||| |    
T  7816127 cataattcttctgccgttatc-attttggtcattttcgtctgtttttaacactaaatgtctaaggtggaccaacattataggtggtcctccatagacctt 7816029  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    | ||| |||||||||||||||||||||||    
T  7816028 actaagttttttaattttaaccatttgat 7816000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 7770915 - 7770809
Alignment:
Q  31 attttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 130  Q
    ||||||||||| | |||  | ||||||||  ||| |||||||||| ||||   ||| ||||||| | ||||||||| || ||| ||||||||||||||||    
T  7770915 attttggtcattttcgtctgtttttaacactaaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaacc 7770816  T
Q  131 atttgat 137  Q
    |||||||    
T  7770815 atttgat 7770809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 7796825 - 7796719
Alignment:
Q  31 attttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 130  Q
    ||||||||||| | |||  | ||||||||  ||| |||||||||| ||||   ||| ||||||| | ||||||||| || ||| ||||||||||||||||    
T  7796825 attttggtcattttcgtctgtttttaacactaaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaacc 7796726  T
Q  131 atttgat 137  Q
    |||||||    
T  7796725 atttgat 7796719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 19913569 - 19913675
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||  |||||  ||||||||| |||||||||| ||||||| | |||  ||||||||||||||  |||| || |||| ||||||||||  |    
T  19913569 cataagtcttctgcggtttatcattttggtcctctccgttagtttttaaccttaaatttctaaggtgaaccaactttatagatggtccaccatagacttt 19913668  T
Q  109 attaaat 115  Q
    |||||||    
T  19913669 attaaat 19913675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 8395072 - 8395200
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||||||||||  ||||||| ||||||||| |||||||||| ||||||| | ||| |  |||  |||||||  |||  ||||||| ||||||| ||  |    
T  8395072 cataattcttcttccgtttaccattttggtcctctccgttagtttttaaccttaaatggttaaaatgaaccaactttgtaggtggtccaccatacacttt 8395171  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    ||||||   ||||||||||||| ||||||    
T  8395172 attaaaaaatttaattttaaccgtttgat 8395200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 16363836 - 16363780
Alignment:
Q  24 gtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaacca 80  Q
    |||||||||||||||| |||||||||| | ||||| | ||| |||||||||||||||    
T  16363836 gtttactattttggtcctctccgttagttattaactttaaatgtctaaggtgaacca 16363780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 36940072 - 36940032
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  36940072 cataaatcttctgccgtttactattttggtcatctccgtta 36940032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 39220762 - 39220874
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    ||||||| ||||||||||||| || ||||| ||||| ||||||| | ||| |||||||||||| ||   ||||| || ||  |||||||||| ||||||     
T  39220762 tcttctgccgtttactattttcgttatctctgttagtttttaaccttaaatgtctaaggtgaaacaatattaaaagtagtctaccatagaccttattaat 39220861  T
Q  115 ttttttaatttta 127  Q
    ||| | |||||||    
T  39220862 tttatgaatttta 39220874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 6397943 - 6397990
Alignment:
Q  90 gtggttcaccatagaccgtattaaattttttaattttaaccatttgat 137  Q
    ||||| ||||||||||| |||||| ||||||||||| |||||||||||    
T  6397943 gtggtccaccatagaccttattaatttttttaatttaaaccatttgat 6397990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 37274964 - 37275010
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||| ||||||| ||||||||||||||||| |||||||||| ||||    
T  37274964 cataaatcttctgccgtttactattttggtcctctccgttagttttt 37275010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 12281805 - 12281716
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtatta 112  Q
    |||||||  ||||| || |||||||||| |||||||||||||  ||||| ||| |||||  || |||||||| ||||||| ||| |||||    
T  12281805 cgtttaccgttttgatcctctccgttagtttttaacatcaaatatctaatgtggaccatgattcaaggtggtccaccatataccttatta 12281716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 31871478 - 31871543
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaacca 80  Q
    |||||||||||||| |||||||||| | || ||||| ||||||| | ||| |||||||||| ||||    
T  31871478 tcttctgtcgtttattattttggtcctttctgttagtttttaaccttaaacgtctaaggtggacca 31871543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 39515319 - 39515404
Alignment:
Q  52 ttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgat 137  Q
    ||||||||  ||| |||||||||| ||||   ||| ||||||| || |||||||| || ||| |||| ||||||||||||||||||    
T  39515319 ttttaacactaaatgtctaaggtggaccaacattataggtggtccatcatagaccttactaagttttataattttaaccatttgat 39515404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 41629839 - 41629920
Alignment:
Q  61 caaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttatt 142  Q
    |||||||||| |||||||||   ||||| |||||||| | || ||| |||||| ||| |||||||||||||||  |||||||    
T  41629839 caaaagtctatggtgaaccaaccttaaaagtggttcatcgtataccttattaattttgttaattttaaccattcaatttatt 41629920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 37324711 - 37324615
Alignment:
Q  25 tttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttta 121  Q
    |||||||||||| |  |||||||||  |||| || | ||| |||||||||||||||  |||| ||||||| ||||||| | | |||||||| |||||    
T  37324711 tttactattttgtttctctccgttaatttttcactttaaatgtctaaggtgaaccaactttataggtggtccaccataaatcttattaaatctttta 37324615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 44302820 - 44302958
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44302820 ttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 44302919  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgta 170  Q
    ||||||| |||||||||||||  |  |||||||||||||    
T  44302920 tttgattgattctttaaaagatgattgttgaattatgta 44302958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 29688011 - 29687818
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    |||| |||||||  || |||||||||||||| |||| ||||||||||||| ||||| || |||||||||||||||||||| |||| || ||| |||||||    
T  29688011 tcttttgtcgttacctcttttggtcatctcctttagtttttaacatcaaatgtctacggcgaaccatatttaaaggtggtccaccgtaaaccttattaaa 29687912  T
Q  115 ttttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||||| | ||||||||||||||||| |||||||||||||||  |||| || ||||| ||||||||||| ||| | ||  ||||||| |||||||    
T  29687911 tttttaagttttaaccatttgattttttctttaaaagagaattgttggatcatgtaaggtctattgtattttattgtgaaccactaccacctaa 29687818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 43894205 - 43894381
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||||| |||||| | ||||||||||||| |||| ||||||||||||||||||| |||| ||| |||  || |||||||||||||||| |||||||    
T  43894205 ttttggtcatatccgttggtttttaacatcaaatgtctgaggtgaaccatatttaaagatggtccacaatatgccctattaaattttttaatcttaacca 43894304  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||| |||||||||||||  | |||||||| |||| |||||||||||||||   ||| |||||||||| ||||    
T  43894305 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttagtgtcaaccactaacatctaa 43894381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 38419056 - 38418879
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| |||||||| |||| |||||||||||||| ||||||||| ||| || |||| ||||||||||||| ||||||| |||||||  || |    
T  38419056 cataagtcttctgccgtttactgttttagtcatctccgttagtttttaacattaaacgtttaagatgaaccatatttataggtggtccaccatatgcctt 38418957  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    | |||||||||| |||||||||||||||||| |||||||||| | | | ||| ||| ||||| |||||||||||||||    
T  38418956 actaaatttttttattttaaccatttgattttttctttaaaaaatagctgttaaatcatgtagggtctattgtacttt 38418879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 2293539 - 2293386
Alignment:
Q  34 ttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatt 133  Q
    |||||| |||||||||| |||||| |||||| |||| | ||||| ||||||||||| |||| |||||||  || ||||||||||||||||||||||||||    
T  2293539 ttggtcctctccgttagtttttaaaatcaaatgtctgaagtgaatcatatttaaagatggtccaccatatgccttattaaattttttaattttaaccatt 2293440  T
Q  134 tgattta-ttctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    ||||||| ||| ||||||||| |||||||||| ||||  |||||||||||||||    
T  2293439 tgatttatttcattaaaagaggaccgttgaatcatgtggggtctattgtacttt 2293386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 11094611 - 11094800
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    ||||| |||||||| |||||||| ||| |||||| ||||||||||||| |||||||||  ||||| |||||| ||||||||||||||||| |||||||||    
T  11094611 ttctgccgtttactgttttggtcctcttcgttagtttttaacatcaaatgtctaaggt--accatgtttaaatgtggttcaccatagaccttattaaatt 11094708  T
Q  117 ttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    ||| ||| |||||| | |||||| ||||||||||||| |  |||| || ||||| ||||||||||| ||| | ||  ||||| |||||||||    
T  11094709 tttaaatattaaccttgtgattttttctttaaaagaggattgttggatcatgtaaggtctattgtattttattgtaaaccaccaacacctaa 11094800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 39592322 - 39592184
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    |||||||||||||||| |||||||  |||||||||  ||||||||||||| ||||||||||| |||| |||||||||||| || |||| ||| |||||||    
T  39592322 tcttctgtcgtttactgttttggttctctccgttaatttttaacatcaaatgtctaaggtgagccatgtttaaaggtggtccatcatataccttattaaa 39592223  T
Q  115 ttttttaattttaaccatttgatttattctttaaaagag 153  Q
    ||||| |||||||||| |||||||| |||| ||||||||    
T  39592222 tttttaaattttaaccttttgattttttctataaaagag 39592184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 35787873 - 35788016
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||||||||||  |||||||| |||||||||| ||||||||||||| ||||||||| || ||| |||||||||||| ||||||||||  |    
T  35787873 cataaatcttctgtcgtttaccgttttggtcctctccgttagtttttaacatcaaatgtctaaggtaaatcatgtttaaaggtggtccaccatagacttt 35787972  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaaga 152  Q
    ||||||||||| |||||||||| ||| | || ||| ||||||||    
T  35787973 attaaatttttaaattttaaccttttaaatttttcattaaaaga 35788016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 186
Target Start/End: Complemental strand, 36604857 - 36604702
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttt-aattttaacc 130  Q
    |||||||| |||||||||| |||||| ||||||  |||||| ||||||||||| ||| ||||  |||||||  || |||||| |||||| ||||||||||    
T  36604857 ttttggtcctctccgttagtttttaatatcaaatatctaagatgaaccatattaaaaagtggcccaccatatgccttattaattttttttaattttaacc 36604758  T
Q  131 atttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    ||||||||| ||||||||||||| ||| |||||| ||||  |||||||| ||||||    
T  36604757 atttgattttttctttaaaagaggaccattgaatcatgtggggtctattatacttt 36604702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 6616242 - 6616105
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatt 116  Q
    |||||||||||| | |||||||| ||||| |||| ||||||||||||| ||| ||||||||| ||  |||||| | || ||| ||||||| |||||||||    
T  6616242 ttctgtcgtttattgttttggtcctctcctttagtttttaacatcaaatgtcaaaggtgaacaatgattaaagatagtccactatagaccttattaaatt 6616143  T
Q  117 ttttaattttaaccatttgattta-ttctttaaaagag 153  Q
    ||| |||||||||| ||||||||| |||||||||||||    
T  6616142 tttaaattttaaccttttgatttatttctttaaaagag 6616105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 6140399 - 6140279
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||||||||||||||| |||||||| ||||||| | |||  ||||||||||||||  |||| |||| || ||||||||||| |    
T  6140399 cataactcttctgtcgtttactattttggtcatttccgttagtttttaaccttaaatatctaaggtgaaccaactttataggtagtccaccatagacctt 6140300  T
Q  109 attaaattttttaattttaac 129  Q
    ||||||| ||||| |||||||    
T  6140299 attaaatcttttatttttaac 6140279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 50530580 - 50530700
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||| |||||||||||||||||||| || ||||  ||||||| | |||||||||||||||||||  |||| |||| || ||||||||||| |    
T  50530580 cataactcttctatcgtttactattttggtcatttctgttaatttttaaccttaaaagtctaaggtgaaccaactttataggtagtccaccatagacctt 50530679  T
Q  109 attaaattttttaattttaac 129  Q
    ||||||||||||| |||||||    
T  50530680 attaaattttttatttttaac 50530700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 86888 - 86970
Alignment:
Q  17 ttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcacc 99  Q
    ||||| |||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  86888 ttctgccgtttactgttttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccacc 86970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 26393166 - 26393038
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||| ||||||| ||  |||||  | ||||||||  ||| |||||||||||||||   ||| ||||||| ||||||||||| |    
T  26393166 cataactcttctgtcgtttaccattttggacacttccgtctgtttttaacactaaatgtctaaggtgaaccaacattataggtggtccaccatagacctt 26393067  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    | ||| |||||||||||||||||||||||    
T  26393066 actaagttttttaattttaaccatttgat 26393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 38370359 - 38370501
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaa-gtctaaggtgaaccatatttaaaggtggttcaccatagaccg 107  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||||| | |||| | |||||||||||||  |||  ||||||| ||||||||| |     
T  38370359 cataactcttctgtcgtttaccattttggtcatctccgttagtttttaaccttaaaatgactaaggtgaaccaactttgtaggtggtccaccatagatct 38370458  T
Q  108 tattaaattttttaattttaaccatttgatttattctttaaaa 150  Q
    ||| || |  ||||||||||||| |||||| | || |||||||    
T  38370459 tataaattcatttaattttaaccctttgatattttttttaaaa 38370501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 11115019 - 11114899
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||| ||||||| | |||||||||| ||||||| | ||| ||||||| |||||||  |||  |||||||  |||||||||  |    
T  11115019 cataactcttctgtcgtttaccattttggacctctccgttagtttttaaccttaaatgtctaagctgaaccaactttgtaggtggtctaccatagacttt 11114920  T
Q  109 attaaattttttaattttaac 129  Q
    ||||||| |||||||||||||    
T  11114919 attaaatgttttaattttaac 11114899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 17319119 - 17319240
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||||||||||||| || ||||||| ||||||| | ||| |||||||||||||||  ||   |||||||  | |||| ||  |    
T  17319119 cataaatcttctggcgtttactattttggtcttcaccgttagtttttaaccttaaatgtctaaggtgaaccaacttcttaggtggtctatcataaacttt 17319218  T
Q  109 attaaattttttaattttaacc 130  Q
    ||||||||||||||||||||||    
T  17319219 attaaattttttaattttaacc 17319240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 29663719 - 29663847
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| |||||| || | ||||||  |||||||||| ||| |||||||||||||||   ||| ||||||| ||||||| ||| |    
T  29663719 cataactcttctgccgtttaccattttgatcttttccgtttaattttaacattaaatgtctaaggtgaaccaacattataggtggtccaccataaacctt 29663818  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    | |||  |||||||||||||||| |||||    
T  29663819 actaagatttttaattttaaccacttgat 29663847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 56296270 - 56296398
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    |||||||||| |||||||||| |||||||| || |||||| | |||||||   ||| |||||||||| ||||   | | |||||||  |||||||||| |    
T  56296270 cataattcttttgtcgtttaccattttggtaatttccgtttgtttttaaccctaaatgtctaaggtggaccaacatcataggtggtctaccatagacctt 56296369  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    | ||| |||||||||||||||||||||||    
T  56296370 actaagttttttaattttaaccatttgat 56296398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 56000365 - 56000492
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgta 109  Q
    |||| ||||||| ||||||| ||||||||| | ||| | || ||||||||  ||| |||||||||| ||||   ||| ||||||| |||| |||||| ||    
T  56000365 ataactcttctgccgtttaccattttggtcttttccatcagtttttaacactaaatgtctaaggtggaccaacattataggtggtccaccgtagacctta 56000464  T
Q  110 ttaaattttttaattttaaccatttgat 137  Q
     ||| |||||||||||||||||||||||    
T  56000465 ctaagttttttaattttaaccatttgat 56000492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 34438483 - 34438615
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||||||||||||  |||| ||||| ||||||| ||||| ||||| |||| || |   ||| || | || ||||||||||| |    
T  34438483 cataaatcttctgccgtttactattttggttctctctgttagtttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagacctt 34438582  T
Q  109 attaaattttttaattttaaccatttgatttatt 142  Q
    ||| ||||||||||||| ||||||||||| ||||    
T  34438583 att-aattttttaatttcaaccatttgatctatt 34438615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 36604646 - 36604586
Alignment:
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgt 169  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||    
T  36604646 attaatttttttaattttaaccatttgattttttcgttaaaagaggaccgttgaatcatgt 36604586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 47668627 - 47668527
Alignment:
Q  18 tctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattt 117  Q
    |||| |||||| | |||||||| |||| ||||| |||||||||||||  |||||||| ||||||  |||||| |||| ||||||||||| | ||||||||    
T  47668627 tctgccgtttattgttttggtcctctctgttagtttttaacatcaaatatctaaggtaaaccatggttaaagatggtccaccatagacctttttaaattt 47668528  T
Q  118 t 118  Q
    |    
T  47668527 t 47668527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 38555289 - 38555187
Alignment:
Q  35 tggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccattt 134  Q
    ||||||| |||||||| ||||||  | ||| |||||||||||||||  |||  |||||||  |||||||||  |||||||||||||||||| |||| |||    
T  38555289 tggtcatttccgttagtttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgttt 38555190  T
Q  135 gat 137  Q
    |||    
T  38555189 gat 38555187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 52980150 - 52980260
Alignment:
Q  98 ccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctacca 197  Q
    ||||| ||| |||||||||||| |||||||||| ||| |||| ||||||||||||| |  |||| ||||||||  |||||||||| ||| | ||  ||||    
T  52980150 ccatataccttattaaatttttaaattttaaccttttaattttttctttaaaagaggattgttggattatgtagagtctattgtattttattgtaaacca 52980249  T
Q  198 ctaacacctaa 208  Q
    | |||||||||    
T  52980250 ccaacacctaa 52980260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 3533632 - 3533519
Alignment:
Q  24 gtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaat 123  Q
    |||||| ||||||||| | ||||| || ||||||||  ||| |||||||||  ||||   ||| ||| ||| ||||||||||| || ||| |||||||||    
T  3533632 gtttaccattttggtcctttccgtcagtttttaacactaaatgtctaaggtcgaccaacattataggcggtccaccatagaccttactaagttttttaat 3533533  T
Q  124 tttaaccatttgat 137  Q
    ||||||||||||||    
T  3533532 tttaaccatttgat 3533519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 7707751 - 7707827
Alignment:
Q  90 gtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaatta 166  Q
    ||||| ||||||||| | |||||| | ||||||||| |||| |||||||| ||||||||||||||||| ||| ||||    
T  7707751 gtggtccaccatagatcctattaattattttaatttcaaccgtttgattttttctttaaaagagaaccattggatta 7707827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 17494218 - 17494329
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    |||||||||| ||||| ||||||||||  ||||||| | ||| |||||| ||||| ||   ||||| || || ||||||||||| |||||| ||| | ||    
T  17494218 cgtttactatattggttatctccgttactttttaaccttaaatgtctaacgtgaaacaacgttaaaagtagtccaccatagaccttattaattttatgaa 17494317  T
Q  123 ttttaaccattt 134  Q
    ||||||||||||    
T  17494318 ttttaaccattt 17494329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 5688676 - 5688635
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  5688676 cataaatcttatgtcgtttactattttggtcatctccgttag 5688635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 34439699 - 34439658
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  34439699 cataaatcttctgccgtttactattttggtcatctccgttag 34439658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 1794574 - 1794634
Alignment:
Q  90 gtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaa 150  Q
    ||||| ||||||||||| |||||||||||||||||| |||| ||||||  ||| |||||||    
T  1794574 gtggtccaccatagaccttattaaattttttaatttaaaccgtttgatcaattttttaaaa 1794634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 28102154 - 28102273
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgta 109  Q
    |||| ||||||| ||||||| ||||||||||| ||||||   ||||||| | ||| |||||||||||| ||  |||| ||||| | |||| || ||| ||    
T  28102154 ataagtcttctgccgtttaccattttggtcatttccgtttatttttaaccttaaatgtctaaggtgaatcaactttataggtgatccaccgtaaacctta 28102253  T
Q  110 ttaaattttttaattttaac 129  Q
    |||||| ||| | |||||||    
T  28102254 ttaaatatttcatttttaac 28102273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 44159168 - 44159210
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaa 57  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||    
T  44159168 tcttctgccgtttattattttggtcatctccgttagtttttaa 44159210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 26788599 - 26788640
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||    
T  26788599 cataaatcttctgccgtttactattttggtcctctccgttag 26788640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 33377403 - 33377362
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||    
T  33377403 cataaatcttctgccgtttactattttggtcctctccgttag 33377362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 5687252 - 5687292
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| |||| || |||||||||||||||||||||||||||    
T  5687252 cataaatcttttgccgtttactattttggtcatctccgtta 5687292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 33376295 - 33376335
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| ||||||||||||||||||||| ||| |||||||||    
T  33376295 cataaatcttctgtcgtttactattttagtcctctccgtta 33376335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 40985 - 41184
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||||||||||| |||| ||  |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||  || |    
T  40985 cataagtcttctgtcgtttactgttttagttctctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgcctt 41084  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    | |||||||||| |||||||||||||||||| || ||||||||| ||||||||||| ||||| | | |||||||||||   ||  |||||||||||||||    
T  41085 actaaatttttttattttaaccatttgattttttttttaaaagataaccgttgaatcatgtaggatttattgtactttactgtgaaccactaacacctaa 41184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 42385 - 42344
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  42385 cataaatcttctgtcgtttactattttggtcctctctgttag 42344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 13220 - 13044
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| | ||| |||| ||||||||||||| |||||||||||||||||||||||| |||| ||||||| ||| || |||| |||||||| |||||||    
T  13220 ttttggtcctatccattaggttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccatataccctactaaaatttttaatcttaacca 13121  T
Q  132 tttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||| ||||||||||||| || |||||||| |||| ||||||||||||||| | ||| |||||||||| ||||    
T  13120 tttgattttttctttaaaagaggactgttgaattttgtagggtctattgtactttattgtcaaccactaacatctaa 13044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 9517 - 9379
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||| |||| | |    
T  9517 cataaatcttctgccgtttaccattttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatctt 9418  T
Q  109 attaaattttttaattttaaccatttgatttattcttta 147  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  9417 attaaattttctaattttaaccatttgattttttcttta 9379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 24495066 - 24494911
Alignment:
Q  33 tttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccat 132  Q
    ||||||| |||||||||| ||||||||||||| |||||| |||||||||||||||| ||||| |||||||  || |||||| ||||||||||||||||||    
T  24495066 tttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatatttaaaagtggtccaccatatgccttattaatttttttaattttaaccat 24494967  T
Q  133 ttgatttatt--ctttaaaagagaaccgttgaattatgtatggtctattgtacttt 186  Q
    ||||||| ||  |||||||||| ||||||||||| ||||   ||||||||||||||    
T  24494966 ttgatttttttcctttaaaagataaccgttgaatcatgtggcgtctattgtacttt 24494911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 14109096 - 14108966
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    |||||||  |||| ||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| ||    
T  14109096 cgtttaccgttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaaattttaaa 14108997  T
Q  123 ttttaaccatttgatttattctttaaaagag 153  Q
    |||||||| ||| |||| |||||||||||||    
T  14108996 ttttaaccttttaattttttctttaaaagag 14108966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 14419053 - 14418923
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    |||||||  |||| ||| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| ||    
T  14419053 cgtttaccgttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaaattttaaa 14418954  T
Q  123 ttttaaccatttgatttattctttaaaagag 153  Q
    |||||||| ||| |||| |||||||||||||    
T  14418953 ttttaaccttttaattttttctttaaaagag 14418923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 4167529 - 4167672
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgta 109  Q
    |||| |||||||||||||||| |||| ||||| || || |  |||||||||||||  ||||||||||||||| |||||||||||| ||||||||| | ||    
T  4167529 ataagtcttctgtcgtttactgttttagtcatttctgtcaatttttaacatcaaatttctaaggtgaaccatgtttaaaggtggtccaccatagatctta 4167628  T
Q  110 ttaaattttttaattttaaccatttgatttattctttaaaagag 153  Q
    |||||||||| ||||| |||| |||||||| |||||||||||||    
T  4167629 ttaaatttttaaatttcaaccttttgattttttctttaaaagag 4167672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 153
Target Start/End: Original strand, 38406095 - 38406238
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| |||||||| |||||||| | |||||||  ||||||||||||| |||||||||||||||||||||||||| || || |||||||| |    
T  38406095 cataaatcttctgacgtttactgttttggtcctttccgttaatttttaacatcaaatgtctaaggtgaaccatatttaaaggtagtcca-catagacctt 38406193  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagag 153  Q
    ||||||||||| ||||| |||| ||| |||| || ||||||||||    
T  38406194 attaaatttttaaatttcaaccttttaattttttgtttaaaagag 38406238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 10256200 - 10256320
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||| ||||||| |||||||||||| ||   ||  ||||||| | |||||||||||||||||||  |||| |||| || ||||||||||| |    
T  10256200 cataactcttctatcgtttagtattttggtcatttctagtaatttttaaccttaaaagtctaaggtgaaccaactttataggtagtccaccatagacctt 10256299  T
Q  109 attaaattttttaattttaac 129  Q
    ||||||| ||||| |||||||    
T  10256300 attaaatcttttatttttaac 10256320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 26406202 - 26406354
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||| ||||||  |||||||||||||||||||  ||||||| | ||| |||||||||||||||  |||  ||||||| |||||||||   |    
T  26406202 cataactcttctgccgtttaacattttggtcatctccgttattttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtccaccatagatatt 26406301  T
Q  109 attaaattttttaattttaaccatttgatttattctttaaaagagaaccgttg 161  Q
    || || |  ||||||||||||| |||||| | || |  |||||||||||||||    
T  26406302 ataaattcatttaattttaaccctttgatattttttaaaaaagagaaccgttg 26406354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 35315199 - 35315099
Alignment:
Q  86 aaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactt 185  Q
    ||||||||| |||||||  || || |||||||||| ||||||||||||| |||| |||||||||||| ||  ||||||| ||||| ||||| ||||||||    
T  35315199 aaaggtggtccaccatatgccttactaaatttttttattttaaccattttattttttctttaaaagataattgttgaatcatgtagggtcttttgtactt 35315100  T
Q  186 t 186  Q
    |    
T  35315099 t 35315099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 132024 - 131898
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    ||||||||| | || ||||||||||||| ||||||| | ||| |||||||||||||||  |||  | ||||   |||||| ||  |||||||||||||||    
T  132024 cgtttactaatgtgatcatctccgttagtttttaaccttaaatgtctaaggtgaaccaactttgtaagtggactaccataaactttattaaattttttaa 131925  T
Q  123 ttttaaccatttgatttattctttaaa 149  Q
    |||||||| |||||| | |||||||||    
T  131924 ttttaaccgtttgatcttttctttaaa 131898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 25154953 - 25154847
Alignment:
Q  31 attttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacc 130  Q
    |||||||||||||||||| | ||||||| | ||| |||||||||||||||  |||| | ||||| ||||||| | | |||||||| ||||| ||||||||    
T  25154953 attttggtcatctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataagtggtccaccataaaacttattaaatcttttatttttaacc 25154854  T
Q  131 atttgat 137  Q
     ||||||    
T  25154853 gtttgat 25154847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 46458752 - 46458646
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||  ||||||| ||||||||| |||||||| | ||||||| | ||| |||||||||||||||  |||| |||| || ||||||||||| |    
T  46458752 cataaatcttcttccgtttaccattttggtcctctccgtttgtttttaaccttaaatgtctaaggtgaaccaactttataggtagtccaccatagacctt 46458653  T
Q  109 attaaat 115  Q
    |||||||    
T  46458652 attaaat 46458646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 4857284 - 4857347
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaac 78  Q
    ||||||| |||||||| |||| ||| |||||||||| ||||||||||||| |||||||||||||    
T  4857284 tcttctgccgtttactgttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaac 4857347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 19848830 - 19848700
Alignment:
Q  52 ttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaag 151  Q
    |||||||| ||||  ||||||||||||||||||| |||||| | |||||| |||| || ||||   ||||||| ||||| |||||||| || ||||||||    
T  19848830 ttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggaccttagtaaaaaatttaattgtaaccctttgattttttgtttaaaag 19848731  T
Q  152 agaaccgttgaattatgtatggtctattgta 182  Q
    || |  |||| || |||||  ||||||||||    
T  19848730 aggattgttggatcatgtagagtctattgta 19848700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 43936179 - 43936133
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  43936179 cataattcttctgtcgtttactattttggtcctctccgttagttttt 43936133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 27899253 - 27899182
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaacca 80  Q
    ||||| |||| |||||||||||||||||||| | |||||||| ||||||| | |||  ||||||||||||||    
T  27899253 cataaatcttttgtcgtttactattttggtcttatccgttagtttttaaccttaaatatctaaggtgaacca 27899182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 18801335 - 18801465
Alignment:
Q  52 ttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaag 151  Q
    |||||||| ||||  ||||||||||||||||||| |||||| | |||||| |||| || ||||   ||||||| ||||| ||| |||| || ||||||||    
T  18801335 ttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggaccttagtaaaaaatttaattgtaaccctttaattttttgtttaaaag 18801434  T
Q  152 agaaccgttgaattatgtatggtctattgta 182  Q
    || |  |||| || |||||  ||||||||||    
T  18801435 aggattgttggatcatgtagagtctattgta 18801465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 35315261 - 35315199
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaa 71  Q
    ||||| |||||||||||||||| |||| ||| |||| ||||| ||||||||||||| ||||||    
T  35315261 cataagtcttctgtcgtttactgttttagtcctctctgttagtttttaacatcaaatgtctaa 35315199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 43930397 - 43930471
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatt 84  Q
    |||| ||||||||||||||||||||||||| |||| ||||  ||||||| | ||| |||||||||| || |||||    
T  43930397 ataaatcttctgtcgtttactattttggtcctctctgttaatttttaaccttaaatgtctaaggtggactatatt 43930471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 14206751 - 14206796
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  14206751 ataaatcttctgtcgtttactattttgctcatctccgttagttttt 14206796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 14215441 - 14215486
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagatttt 55  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||    
T  14215441 ataaatcttctgtcgtttactattttgctcatctccgttagttttt 14215486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 45719692 - 45719820
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||| |||||| ||||||||  | | ||| || ||||||||  ||| |||||||||| ||||   ||| ||||| | ||||||| ||| |    
T  45719692 cataactcttctgttgtttaccattttggtttttttcgtcagtttttaacactaaatgtctaaggtggaccaacattataggtgctccaccataaacctt 45719791  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    | ||| ||||||||||||||||| |||||    
T  45719792 actaagttttttaattttaaccaattgat 45719820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 19278430 - 19278471
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttag 50  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||    
T  19278430 cataattcttctgccgtttactattttggtcctcttcgttag 19278471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 35484329 - 35484222
Alignment:
Q  29 ctattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaa 128  Q
    |||||||||||  || |||||| |||||||   ||| |||||||||||||||   ||| ||||||| ||||||||| | || || | |||||||||||||    
T  35484329 ctattttggtccacttcgttagtttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccatagatcttaataga-tttttaattttaa 35484231  T
Q  129 ccatttgat 137  Q
    || ||||||    
T  35484230 ccctttgat 35484222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 207814 - 207696
Alignment:
Q  32 ttttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaacca 131  Q
    |||||||| |||||||||| ||||||||||||| |||| ||||||||||| |||||||||||| |||||||  || || |||||||||||||||||||||    
T  207814 ttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaattttttaattttaacca 207715  T
Q  132 tttgatttattctttaaaa 150  Q
    |||||||| ||||||||||    
T  207714 tttgattttttctttaaaa 207696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 18139520 - 18139352
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    ||||||| |||||| | |||||||| ||||| |||| ||||||||||||| |||||||||||||||| ||||||| || | ||||||||||  |||||||    
T  18139520 tcttctgccgtttattgttttggtcctctccattagtttttaacatcaaatgtctaaggtgaaccatgtttaaagatgatccaccatagacattattaaa 18139421  T
Q  115 ttttttaattttaacc-atttgatttattctttaaaagagaaccgttgaattatgtatggtctattgta 182  Q
    ||||| ||||||||||  |||||||| ||||||||||||| |  |||| || ||||| |||||||||||    
T  18139420 tttttaaattttaacctttttgattttttctttaaaagaggattgttggatcatgtagggtctattgta 18139352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 14328813 - 14328707
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    |||||||||| |||||||||||||||||||| |||||||||  ||||||| | ||| |||||||||||||||  |||| ||||||| ||||||||||| |    
T  14328813 cataattcttttgtcgtttactattttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagacctt 14328714  T
Q  109 attaaat 115  Q
    |||||||    
T  14328713 attaaat 14328707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 14421823 - 14421717
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    |||||||||| |||||||||||||||||||| |||||||||  ||||||| | ||| |||||||||||||||  |||| ||||||| ||||||||||| |    
T  14421823 cataattcttttgtcgtttactattttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagacctt 14421724  T
Q  109 attaaat 115  Q
    |||||||    
T  14421723 attaaat 14421717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 33802056 - 33801884
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| |||||||| ||||||  | |||||| |||||||||| |||||||||||||  ||||||||  |||||  || |||||||| ||||||| ||| |    
T  33802056 cataaatcttctgtagtttaccgtattggtcctctccgttagtttttaacatcaaatatctaaggtagaccatgattcaaggtggtccaccatatacctt 33801957  T
Q  109 attaaattttttaattttaaccatttga-tttattctttaaaagagaaccgttgaattatgtatggtctattgt 181  Q
    ||||||||||| |||||||| | ||||| ||| ||||||||||||| |  |||| || ||||| ||||||||||    
T  33801956 attaaatttttaaattttaa-cttttgatttttttctttaaaagaggattgttggatcatgtagggtctattgt 33801884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 293679 - 293551
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||||||||||| ||||||||| ||||||||   ||||||| | ||| |||||||||||||||  |||| ||||||| ||||||||||| |    
T  293679 cataagtcttctgtcgtttaccattttggtcctctccgtttatttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagacctt 293580  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    |||||||    || |||||||||||||||    
T  293579 attaaataacatatttttaaccatttgat 293551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 13507204 - 13507068
Alignment:
Q  15 tcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa 114  Q
    ||||||||||||  || || | |||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||| || ||| | |  || ||||    
T  13507204 tcttctgtcgttatctcttctagtcatctctgttagtttttaacatcaaatgtttaaggtgaaccatatttaaaggtggtcca-catgggctttaataaa 13507106  T
Q  115 ttttttaattttaaccatttgatttattctttaaaaga 152  Q
       | ||||||||||| |||||||| ||||||||||||    
T  13507105 acctctaattttaaccctttgattttttctttaaaaga 13507068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 27440214 - 27440086
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||  ||||||||||||||||| |||||||||  ||||||| | ||| ||||||||||||  |  |||  |||||||  |||||| ||  |    
T  27440214 cataaatcttcttccgtttactattttggtcctctccgttaatttttaactttaaatgtctaaggtgaattaactttgtaggtggtctaccataaacttt 27440115  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    |||||||||||||||||||||| ||||||    
T  27440114 attaaattttttaattttaaccgtttgat 27440086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 34084154 - 34084074
Alignment:
Q  128 accatttgatttattctttaaaagagaaccgttgaattatgtatggtctattgtactttctagtctaccactaacacctaa 208  Q
    |||||||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||   ||  |||||||||||||||    
T  34084154 accatttgattttttctttaaatgaggaccgttgaattatgtagggtctattgtactttactgtgaaccactaacacctaa 34084074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 9927695 - 9927802
Alignment:
Q  22 tcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttta 121  Q
    ||||||||||||||||||||||||||||  ||||||| | ||| ||||||| |||||||  |||  |||||||  |||| ||||  ||||| ||||||||    
T  9927695 tcgtttactattttggtcatctccgttaatttttaaccttaaatgtctaagatgaaccaactttgtaggtggtctacca-agactttattacatttttta 9927793  T
Q  122 attttaacc 130  Q
    |||||||||    
T  9927794 attttaacc 9927802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 2130877 - 2130990
Alignment:
Q  26 ttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattt 125  Q
    |||||||||||||| ||||| ||||  |||||| | |||  ||||||||||||||  |||| ||||||||||||||||| |  || ||  ||| |||||     
T  2130877 ttactattttggtcctctcccttagtatttaaccttaaatatctaaggtgaaccacctttataggtggttcaccatagatctcataaatctttctaattc 2130976  T
Q  126 taaccatttgattt 139  Q
    ||||||||||||||    
T  2130977 taaccatttgattt 2130990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 22299942 - 22299902
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgtta 49  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  22299942 cataaatcttctgccgtttactattttggtcatctccgtta 22299902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 16268633 - 16268755
Alignment:
Q  24 gtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaat 123  Q
    |||||||| | ||||| |||  ||||| | ||||| | ||| |||||| ||||||||  |||  | |||||  |||||||||  ||||||||||||||||    
T  16268633 gtttactaatgtggtcctcttagttagttattaaccttaaatgtctaacgtgaaccaactttgtatgtggtctaccatagactttattaaattttttaat 16268732  T
Q  124 tttaaccatttgatttattcttt 146  Q
    |||| || |||||||| ||||||    
T  16268733 tttatccgtttgattttttcttt 16268755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 56738 - 56595
Alignment:
Q  10 ataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgta 109  Q
    |||| ||||||| |||||||| ||| | || ||||  |||| |||||||||||||  |||||||  ||| || ||||||| |||| ||||| ||||| ||    
T  56738 ataaatcttctgccgtttactgtttagatcctctctattagtttttaacatcaaatatctaagggaaactatgtttaaagatggtccaccaaagacctta 56639  T
Q  110 ttaaattttttaattttaaccatttga-tttattctttaaaaga 152  Q
    |||||||||| |||||||||| ||||| ||| ||||||||||||    
T  56638 ttaaatttttaaattttaaccttttgatttttttctttaaaaga 56595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 16036 - 16150
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 122  Q
    ||||||||||||| ||| |||||||||| ||||||| | ||| ||||||| |||||||  |||| || |||| ||||||||||| |||||||  |||||     
T  16036 cgtttactattttagtcctctccgttagtttttaaccttaaatgtctaagatgaaccaactttatagatggtccaccatagaccttattaaaccttttat 16135  T
Q  123 ttttaaccatttgat 137  Q
    |||||||| ||||||    
T  16136 ttttaaccgtttgat 16150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 77206 - 77090
Alignment:
Q  23 cgtttactattttggtcatctccgttagattttaacatcaaaagt--ctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttt 120  Q
    |||||||| |||||||| |||||||||   ||| |||||||| ||  ||||||||||||||||||||||||||| |||||| |||| ||| |  |  |||    
T  77206 cgtttactgttttggtcttctccgttaatgtttgacatcaaatgtgtctaaggtgaaccatatttaaaggtggtccaccattgaccttataagttcattt 77107  T
Q  121 aattttaaccatttgat 137  Q
    |||||||||||||||||    
T  77106 aattttaaccatttgat 77090  T

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Target: scaffold0003 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 47147 - 47275
Alignment:
Q  9 cataattcttctgtcgtttactattttggtcatctccgttagattttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgt 108  Q
    ||||| ||||||  ||||||||||||||||| |||||||||  ||||||| | ||| ||||||||||||  |  |||  |||||||  |||||| ||  |    
T  47147 cataaatcttcttccgtttactattttggtcctctccgttaatttttaactttaaatgtctaaggtgaattaactttgtaggtggtctaccataaacttt 47246  T
Q  109 attaaattttttaattttaaccatttgat 137  Q
    |||||||||||||||||||||| ||||||    
T  47247 attaaattttttaattttaaccgtttgat 47275  T

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Target: scaffold0128 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 22139 - 22193
Alignment:
Q  88 aggtggttcaccatagaccgtattaaattttttaattttaaccatttgatttatt 142  Q
    ||||||| ||||||||||| |||||| || |||||||| ||||||||||||||||    
T  22139 aggtggtccaccatagaccctattaatttctttaatttaaaccatttgatttatt 22193  T

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Target: scaffold2071 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 636 - 576
Alignment:
Q  90 gtggttcaccatagaccgtattaaattttttaattttaaccatttgatttattctttaaaa 150  Q
    ||||| ||||||||||| |||||||||||||||||| |||| |||||| | || |||||||    
T  636 gtggtccaccatagaccttattaaattttttaatttaaaccgtttgatctgttttttaaaa 576  T

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Target: scaffold0166 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 4117 - 4173
Alignment:
Q  73 gtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaattttaac 129  Q
    ||||||||  |||| ||||||| ||||||| |||||||||||| ||||| |||||||    
T  4117 gtgaaccaactttataggtggtccaccataaaccgtattaaatcttttatttttaac 4173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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