View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1847_low_14 (Length: 255)

Name: NF1847_low_14
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1847_low_14
NF1847_low_14
[»] chr3 (10 HSPs)
chr3 (42-237)||(6948327-6948528)
chr3 (26-241)||(8590777-8590984)
chr3 (77-237)||(6553253-6553415)
chr3 (162-237)||(6737042-6737117)
chr3 (162-244)||(6519064-6519146)
chr3 (164-241)||(6478886-6478963)
chr3 (164-241)||(8455702-8455779)
chr3 (20-69)||(6478727-6478774)
chr3 (88-121)||(8455813-8455846)
chr3 (33-77)||(6478067-6478111)
[»] scaffold0425 (1 HSPs)
scaffold0425 (77-237)||(6292-6454)
[»] chr4 (1 HSPs)
chr4 (151-201)||(41068269-41068320)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 42 - 237
Target Start/End: Complemental strand, 6948528 - 6948327
Alignment:
Q  42 aaatcaaaacgagagatattcatatattattat---gcat--atataattcttgtttcatttaattttacttgactgaaagaacacaattaccttgcaga 136  Q
    ||||||||||||||||||||| |||||||||||   ||||  ||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||    
T  6948528 aaatcaaaacgagagatattcttatattattattatgcatgtatataattcttgtttcatttaattttacttgacagaaagaacacatttatcttgcaga 6948429  T
Q  137 ggtttcaagacttgtgcttcaggct-aatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggct 235  Q
    || || ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  6948428 ggctttaagacttgtgcttcaggctcaatatatcatggcagagttggtagctggggcatttcttcagtcttcttttcaagtgattattgagaagttggct 6948329  T
Q  236 tc 237  Q
    ||    
T  6948328 tc 6948327  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 26 - 241
Target Start/End: Complemental strand, 8590984 - 8590777
Alignment:
Q  26 ggatgtaacaagagagaaatcaaaacgagagatattcatatattattatgcata--tataattcttgtttcatttaattttacttgactgaaagaacaca 123  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||| ||||||| |||    
T  8590984 ggatgtaacaagagagaaatcaaaacgagagatattcatctattattatgcatatatataattcttgtttcatttaattttatttgacagaaagaataca 8590885  T
Q  124 att--accttgcagaggtttcaagacttgtgcttcaggctaatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataa 221  Q
     ||  |  |||||||||  | ||||||             | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |    
T  8590884 tttccattttgcagaggcattaagact------------cattatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatta 8590797  T
Q  222 ttgagaagttggcttcggtt 241  Q
    ||||||||||||||||||||    
T  8590796 ttgagaagttggcttcggtt 8590777  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 6553253 - 6553415
Alignment:
Q  77 atatataattcttgtttcatttaattttacttgactgaaagaacacaattac--cttgcagaggtttcaagacttgtgcttcaggct-aatatatcatgg 173  Q
    |||| ||||| |||||||||| | ||||| ||||  ||||||||||| || |  |||||||||| || ||||||||||||| ||||| || |||||||||    
T  6553253 atatttaattattgtttcattca-ttttatttgatagaaagaacacatttccatcttgcagaggctttaagacttgtgctttaggctcaacatatcatgg 6553351  T
Q  174 cagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttc 237  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  6553352 cagagttggtagccggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6553415  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 6737117 - 6737042
Alignment:
Q  162 aatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttc 237  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  6737117 aatatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6737042  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 6519064 - 6519146
Alignment:
Q  162 aatatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggttcat 244  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| || ||||||    
T  6519064 aatatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaagtgatttttgagaagttggcgtctgttcat 6519146  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 6478886 - 6478963
Alignment:
Q  164 tatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggtt 241  Q
    |||||||||||||| |||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||||    
T  6478886 tatatcatggcagagttggtagctggggcatttcttcagtcttcttttcaagtgatttttgagaagttggcttcggtt 6478963  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 8455779 - 8455702
Alignment:
Q  164 tatatcatggcagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttcggtt 241  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| || |||||||| |||||||||    
T  8455779 tatatcatggcagagttggtagctggggcatttcttcagtcttcctttcaattgattatcgagaagttagcttcggtt 8455702  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 6478727 - 6478774
Alignment:
Q  20 gcgtggggatgtaacaagagagaaatcaaaacgagagatattcatatatt 69  Q
    ||||||| |||||||  ||||||||||||||||| |||||||||||||||    
T  6478727 gcgtgggaatgtaac--gagagaaatcaaaacgaaagatattcatatatt 6478774  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 8455846 - 8455813
Alignment:
Q  88 ttgtttcatttaattttacttgactgaaagaaca 121  Q
    |||||||||||||||||||||||| |||||||||    
T  8455846 ttgtttcatttaattttacttgacagaaagaaca 8455813  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 6478067 - 6478111
Alignment:
Q  33 acaagagagaaatcaaaacgagagatattcatatattattatgca 77  Q
    |||| |||||||||||||| ||||| |||||||| ||||||||||    
T  6478067 acaacagagaaatcaaaacaagagaaattcatattttattatgca 6478111  T

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Target: scaffold0425 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 77 - 237
Target Start/End: Original strand, 6292 - 6454
Alignment:
Q  77 atatataattcttgtttcatttaattttacttgactgaaagaacacaattac--cttgcagaggtttcaagacttgtgcttcaggct-aatatatcatgg 173  Q
    |||||||||| |||||||||| | ||||| ||||  ||||||||||| || |  |||||||||| || ||||||||||||| ||||| || |||||||||    
T  6292 atatataattattgtttcattca-ttttatttgatagaaagaacacatttccatcttgcagaggctttaagacttgtgctttaggctcaacatatcatgg 6390  T
Q  174 cagaattggtagctggggcatttcttcagtcatcctttcaagtgataattgagaagttggcttc 237  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  6391 cagagttggtagccggggcatttcttcagtcttcctttcaagtgattattgagaagttggcttc 6454  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 41068269 - 41068320
Alignment:
Q  151 tgcttcaggct-aatatatcatggcagaattggtagctggggcatttcttca 201  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  41068269 tgcttcaggctcaatgtatcatggcagagttggtagctggggcatttcttca 41068320  T

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