View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1847_low_15 (Length: 250)
Name: NF1847_low_15
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1847_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 6899206 - 6898983
Alignment:
| Q |
13 |
gggagaggattgtctcccgtgagattttctccggtttttctccggtgaacaatcttagcccttcatttgtttgatgatagatcaacggccaacaataaac |
112 |
Q |
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| T |
6899206 |
gggagaggattgtctccggtgagattttctccggcttttctccagtgaacaatcttagcccttcatttgtttaatgatagatcaacggccaacaataaac |
6899107 |
T |
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| Q |
113 |
caattaaatcacatggnnnnnnncaatttcatttccgtcctttttcatctcttcttccaggaaaagtattgaaacccttcaccttcttcaataccaacaa |
212 |
Q |
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| T |
6899106 |
caattaaatcacatggtttttttcaatttcatttccgtcctttttcatctcttcttccaggaaaagtattgaaacccttcaccttcttcaatatcaacaa |
6899007 |
T |
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| Q |
213 |
caacacagtgaatacgatctatat |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
6899006 |
caacacagtgaatacgatctatat |
6898983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 6898445 - 6898498
Alignment:
| Q |
48 |
ttttctccggtgaacaatcttagcccttcatttgtttgatgatagatcaacggc |
101 |
Q |
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| T |
6898445 |
ttttctccagtgaacaatcttagcccttcatttgtttaatgataaatcaacggc |
6898498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 29903730 - 29903816
Alignment:
| Q |
14 |
ggagaggattgtctcccgtgagattttctccggtttttctccggtgaacaatcttagcccttcatttgtttgatgatagatcaacgg |
100 |
Q |
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| T |
29903730 |
ggagaggattgtctgccatgagattttcttttgtttttctccggtcaacaatattagcccttcatttgtttaatgatagatcaacgg |
29903816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 13735766 - 13735840
Alignment:
| Q |
160 |
tctcttcttccaggaaaagtattgaaacccttcaccttcttcaataccaacaacaacacagtgaatacgatctat |
234 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| || |||||| |
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| T |
13735766 |
tctcatcttccaggaaaaatattgaaacccttcaccttcttcaataacaacaacaacacagggaacactatctat |
13735840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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