View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1847_low_19 (Length: 232)
Name: NF1847_low_19
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1847_low_19 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 26048156 - 26048290
Alignment:
| Q |
98 |
ataaagaaccgtacctctcctttttatttgttcccaaaatctctcttttctttacaacaagctttcaagtttcttaaaatctctcatcattcttcccact |
197 |
Q |
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| T |
26048156 |
ataaagaaccgtacctctcctttttatttgttcccaaaatctctcttttctttacaacaagctttcaagtttcttaaaatctctcatcattcttcccacg |
26048255 |
T |
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| Q |
198 |
attcattcgttcatggattattactattgctatgc |
232 |
Q |
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| T |
26048256 |
attcattcggtcatggatgattactattgctatgc |
26048290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 26048040 - 26048136
Alignment:
| Q |
17 |
tctctcatatcaacatgatagccatatttttctcctaattgtttcaaagttaaaaacggttacagattcttctttttatatataaagaaccgtacct |
113 |
Q |
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| T |
26048040 |
tctctcatatcaacatgatagccatatttttctcctaattgtttcaaagttgaaaacggttacacattcttctttttatatataaagaaccgtacct |
26048136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 26041826 - 26041989
Alignment:
| Q |
68 |
aaaaacggttacagattcttctttttatatataaagaaccgtacctctcctttttatttgttcccaaaa---tctctcttttctttacaacaagctttca |
164 |
Q |
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||||||||||||||||| || ||||||| ||| |||| |||| |||| |||||||||||||||||| | ||| ||||| | |||||||||||||| |
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| T |
26041826 |
aaaaacggttacagattactccttttataaatatagaaacgtatctcttagttttatttgttcccaaaaatctttcttttttcctaacaacaagctttca |
26041925 |
T |
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| Q |
165 |
agtttcttaaaatctctcatcattcttcccactattcattcgttcatggattattactattgctatgc |
232 |
Q |
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| T |
26041926 |
agtttcttaaaatctctcatcattcttcccacaaatca----ttcatggatgattactattgctatgc |
26041989 |
T |
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