View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1847_low_5 (Length: 340)
Name: NF1847_low_5
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1847_low_5 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 1529775 - 1530097
Alignment:
| Q |
18 |
tttgcttcaaaggtgagtctattctttcattactttgctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggtta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1529775 |
tttgcttcaaaggtgagtctattctttcattactttgctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggtta |
1529874 |
T |
|
| Q |
118 |
tatgaaatcttctaatattgatacttatgttcatctcaaggttgatttgtgcattgtatctcttcttctttttttaatcagnnnnnnnnnnaatgattat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1529875 |
tatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgcattgtatctcttcttctttttttaatcagttttttttttaatgattat |
1529974 |
T |
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| Q |
218 |
ttgaaaaccccttttgatctatgtgctaaaaattgagnnnnnnnngttgggtttgttgaaatctggatagtagtttgaatttgataaatattgctattga |
317 |
Q |
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| T |
1529975 |
ttgaaaaccccttttgatctatgtgctaaaaattgagttttttttgttgggtttgttgaaatctgaatagtagtttgaatttgataaatattgctattta |
1530074 |
T |
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| Q |
318 |
aacatgtttaatgattgttgttt |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
1530075 |
aacatgtttaatgattgttgttt |
1530097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 22476943 - 22476619
Alignment:
| Q |
18 |
tttgcttcaaaggtgagtctattctttcattactttgctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattatttggtta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22476943 |
tttgcttcaaaggtgagtctattctttcattactttgttgttacaacatgagaaatccctaaattaattttaaaattgcagccttctaattatttggtta |
22476844 |
T |
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| Q |
118 |
tatgaaatcttctaatattgatacttatgttcatctcaaggttgatttgtgcattgtatctcttcttctttttttaatcag--nnnnnnnnnnaatgatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
22476843 |
tatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgcattgtatctcttctactttttttaatcagtttttttttttttatgatt |
22476744 |
T |
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| Q |
216 |
atttgaaaaccccttttgatctatgtgctaaaaattgagnnnnnnnngttgggtttgttgaaatctggatagtagtttgaatttgataaatattgctatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22476743 |
atttgaaaaccccttttgatctatgtgctaaaaattaagttttttttgtttggtttgttgaaatctggattgtagtttgaatttgataaatattgctatt |
22476644 |
T |
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| Q |
316 |
gaaacatgtttaatgattgttgttt |
340 |
Q |
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| T |
22476643 |
taaacatgtttaatgattgttgttt |
22476619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 18 - 340
Target Start/End: Original strand, 26841544 - 26841871
Alignment:
| Q |
18 |
tttgcttcaaaggtgagtctattctttcattactttg------ctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattatt |
111 |
Q |
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||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26841544 |
tttgcttcaaaggcgagtctattctttcgttactttgttgtgcctgttacaacatcaagaatccctaaattaattttaaaattgcaaccttctaattatt |
26841643 |
T |
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| Q |
112 |
tggttatatgaaatcttctaatattgatacttatgttcatctcaaggttgatttgtgcattgtatctcttcttctttttttaatcagnnnnnnnnnnaat |
211 |
Q |
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| T |
26841644 |
gggttatatgaaatcttctaatattgatacttatgttcatctcaaggtcgatttgtgaattgtatctcttatt-tttttttaatcagttttttttt--at |
26841740 |
T |
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| Q |
212 |
gattatttgaaaaccccttttgatctatgtgctaaaaattgag--nnnnnnnngttgggtttgttgaaatctggatagtagtttgaatttgataaatatt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26841741 |
gattatttgaaaaccccttttgatctatgtgctaaaaattgagtatttcttttgttcgttttgttgaaatctggattgtagtttgaatttgataaatatt |
26841840 |
T |
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| Q |
310 |
gctattgaaacatgtttaatgattgttgttt |
340 |
Q |
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|||||| |||||||||| ||||||||||||| |
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| T |
26841841 |
gctatttaaacatgtttgatgattgttgttt |
26841871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 336
Target Start/End: Original strand, 29099045 - 29099167
Alignment:
| Q |
213 |
attatttgaaaaccccttttgatctatgtgctaaaaattgagnnnnnnnngttgggtttgttgaaatctggatagtagtttgaatttgataaatattgct |
312 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||| || ||||||||||||||||||| |||||| |
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| T |
29099045 |
attatttggaaaccccttttgatctatgtgctaaaaattgaatttttttaat-gggtttgtttaaatctgcattgtagtttgaatttgataaagattgct |
29099143 |
T |
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| Q |
313 |
attgaaacatgtttaatgattgtt |
336 |
Q |
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||| ||| |||||||||||||||| |
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| T |
29099144 |
atttaaatatgtttaatgattgtt |
29099167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 21923016 - 21923060
Alignment:
| Q |
296 |
atttgataaatattgctattgaaacatgtttaatgattgttgttt |
340 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
21923016 |
atttgataaatactgctatttaaacatgtttaatgattgttgttt |
21923060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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