View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1847_low_6 (Length: 305)
Name: NF1847_low_6
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1847_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 8932817 - 8933106
Alignment:
| Q |
7 |
caattaagcttagccaattcaaattgttgttgtccaatagctaataatccctcataaaaatcaggtttaatcacaactgcttgttcatacttttctctag |
106 |
Q |
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| T |
8932817 |
caattaagcttagccaattcaaattgttgttgtccaatagctaataatccctcataaaaatcaggtttaatcacaactgcttgttcatacttttctctag |
8932916 |
T |
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| Q |
107 |
ctaaatagtatttttcctgaacaaaatcaaattcagattcgttcatcactaaaacctcattctcattttcatccattctaacaaatttcctagcagcaca |
206 |
Q |
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| T |
8932917 |
ctaaatagtatttttcctgaacaaaatcaaattcagattcgttcatcactaaaacctcattctcattttcatccattctaacaaatttcctagcagcaca |
8933016 |
T |
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| Q |
207 |
catgtgaacatttccccaattgaaaaacgccaaagcagcaacctcttgaaacttaaattcagctttgtcaagcaaatcttgagcttcatc |
296 |
Q |
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| T |
8933017 |
catgtgaacatttccccaattgaaaaacgccaaagcagcaacctcttgaaacttaaattcagctttgtcaagcaaatcttgagcttcatc |
8933106 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 55533641 - 55533708
Alignment:
| Q |
193 |
ttcctagcagcacacatgtgaacatttccccaattgaaaaacgccaaagcagcaacctcttgaaactt |
260 |
Q |
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| T |
55533641 |
ttcctagcagcgcacatgtgaacattaccccagttgaagaatgccaatgctgccacctcctgaaactt |
55533708 |
T |
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