View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1847_low_7 (Length: 291)
Name: NF1847_low_7
Description: NF1847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1847_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 41975594 - 41975835
Alignment:
| Q |
8 |
tacacttcaagaaatttgtacttgaagctgcagaatggtaatttttcccataaacacaagtgtatatgaatttacttagctttgaggatcactaactcat |
107 |
Q |
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| T |
41975594 |
tacacttcaaggaatttgt---tgaagctgcagaatggtaattttgcccataaacacaagtgtatatgaatttactt-----tgaggatcactaactcat |
41975685 |
T |
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| Q |
108 |
catcctctggaagcccctgatgaaagaggacttgtttgcaatctcatcatatctataaaccttctcttggaagttaggtatcacactgaaggcaaatgct |
207 |
Q |
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| T |
41975686 |
cctcctctggaagcccctgatgaaagaggacttgtttgcaatctcatcatatctataaaccttctcttggaagtgaggtatcacactgaaggcaaatgct |
41975785 |
T |
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| Q |
208 |
tgatttcaaagcattaagatttgtagagacacaaatcatggcagaagcaa |
257 |
Q |
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| T |
41975786 |
tgatttcaaagcattaagatttgtagagacagaaatcatggcagaagcaa |
41975835 |
T |
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Back To:
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Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 257
Target Start/End: Complemental strand, 1222661 - 1222426
Alignment:
| Q |
4 |
aatatacacttcaagaaatttgtacttgaagctgcagaatggtaatttttcccataaacacaagtgtatatgaatttacttagctttgaggatcactaac |
103 |
Q |
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| T |
1222661 |
aatatacacttcaaggaatttgt---tgaagctgcagaatggtaatttttcccataaacacaagtgtatatgaatttactt-----tgaggatcactaac |
1222570 |
T |
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| Q |
104 |
tcatcatcctctggaagcccctgatgaaagaggacttgtttgcaatctcatcatatctataaaccttctcttggaagttaggtatcacactgaaggcaaa |
203 |
Q |
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| T |
1222569 |
tcatcatcctctggaagcccctgttgaaagaggacttgtttgcaatctcatcatatctataaaccttctcttggaagtgaggtatcacaccgaaggcaaa |
1222470 |
T |
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| Q |
204 |
tgcttgatttcaaagcattaagatttgtagagacacaaatcatggcagaagcaa |
257 |
Q |
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| T |
1222469 |
tgctt----------aattaggatttgtagagacagaaatcatggcagaagcaa |
1222426 |
T |
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