View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18480_high_1 (Length: 738)
Name: NF18480_high_1
Description: NF18480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18480_high_1 |
 | |
|
| [»] scaffold0112 (2 HSPs) |
| | |
|
| [»] scaffold0093 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 20 - 722
Target Start/End: Original strand, 15616798 - 15617497
Alignment:
| Q |
20 |
tttgaaatttcagataacttgattatgttgtctctcgtatttacaatgcgcggtactttccttcccgtagttacttgacgttgaatctaggtcacaaacc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15616798 |
tttgaaatttcagataacttgattatgttatctctcgtatttacaatgcgtggtactttccttcccgtagttacttgacgttgaatctaggtcgtaaacc |
15616897 |
T |
|
| Q |
120 |
tagctatgtaatgagaagtattttgaaggtttgcttcatggtgcacaacagggcacattggtgtatcagtacggatcactctatatctatacttgatgaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15616898 |
tagctatgtaatgagaagtattttgaaggtttgcttcatagtgcacaacagggcgcattggtgtatcagtacgggtcactctatatctatacttgatgaa |
15616997 |
T |
|
| Q |
220 |
ccatggttagtgaatgaggatcacatagatggaaatattgtgggggtaaactttgtgagggattttcatatgaatagtttgatgaattcctcgtcgaatg |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15616998 |
ccatggttagtgaatgaggatgacatagatggaaatattgtgggggtaaactttgtgagggattttcatatgaatagtctgatgaattcctcgtcgaatg |
15617097 |
T |
|
| Q |
320 |
gctggaatgaggaagtgattcaacaagtgtttagtttcaatacagccgaatcttttcgtcgaacattgttactcgatcaggtggtggatgataggttaat |
419 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15617098 |
gctagaatgaggaagtgattcaacaagtgtttagtttcaatacagctgaattttttcttcgaacattgttactcgatcaggtggtggatgataggttaat |
15617197 |
T |
|
| Q |
420 |
attgaaatccaggaagaatggtttatattttgttaaaagtacttacatattgtgtgtggaagaattggtatatgtttctcgcattcgacgatcgggatat |
519 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
15617198 |
attgaaatccgagaagaatggtttatattctgttaaaagtacttacatattgtgtgtggaagaattggtatatgtttctcgcattcaacgatcgagatat |
15617297 |
T |
|
| Q |
520 |
tggtatgatatttagagactgaaagtgcctccaaaagtaaagaatttgatctataaaacgtatcgtggggtgcttaccaaaccaagtatggttttaagat |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15617298 |
tggtatgatatttagagactgaaagtgcctccaaaagtaaagaatttgatctggaaaacgtatcgt-gggtgcttaccaaaccaagtatggttttaagat |
15617396 |
T |
|
| Q |
620 |
aaaggagtaaaatattccccaagttgtgtcaatatattgtggtggtcttcatgaggatcttgctcatatttttgtttcgaaattcgagtgtcctttaact |
719 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15617397 |
aaaggagtgaaatattccccaagttgtgtcaatatattgtggtggtcttcatgaggatcttgctcata--tttgtttcgaaattcgagtgtcctttaact |
15617494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 16042836 - 16042920
Alignment:
| Q |
195 |
tcactctatatctatacttgatgaaccatggttagtgaatgaggatcacatagatggaaatattgtgggggtaaactttgtgagggatttt |
285 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | |||| ||||||||| |||||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
16042836 |
tcactctatatcaatactttatgaaccat------taaatggggatcacatggatggaaatattatgggtgaaaactttgtgagggatttt |
16042920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 47 - 569
Target Start/End: Complemental strand, 43219527 - 43219005
Alignment:
| Q |
47 |
ttgtctctcgtatttacaatgcgcggtactttccttcccgtagttacttgacgttgaatctaggtcacaaacctagctatgtaatgagaagtattttgaa |
146 |
Q |
| |
|
|||||||||| |||||||| || || || |||||||| | ||||||||||||| ||| | |||||||| |||||||||| ||||||||||||||| |
|
|
| T |
43219527 |
ttgtctctcgcatttacaaggctcgatattttccttctcatagttacttgacgactaatttgggtcacaatcctagctatgcctggagaagtattttgaa |
43219428 |
T |
|
| Q |
147 |
ggtttgcttcatggtgcacaacagggcacattggtgtatcagtacggatcactctatatctatacttgatgaaccatggttagtgaatgaggatcacata |
246 |
Q |
| |
|
|| | ||||| |||| | |||| | ||||||||| |||||| |||||||||||| |||||||||||||| ||||| |||||| ||| | ||| |
|
|
| T |
43219427 |
ggcgcgtttcatagtgcgcggtggggcgcgttggtgtattggtacgggtcactctatatcaatacttgatgaaccttggttgttgaatggggaccgcatt |
43219328 |
T |
|
| Q |
247 |
gatggaaatattgtgggggtaaactttgtgagggattttcatatgaatagtttgatgaattcctcgtcgaatggctggaatgaggaagtgattcaacaag |
346 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||||| || || |||| ||||| || |||| |||| || ||||| ||||||| |||||||||| |
|
|
| T |
43219327 |
gatggaaatattatgggtgcaaactttgtgagggatttttatgggagtagtctgatgcatgtctcgacgaagggttggaaccaggaagttattcaacaag |
43219228 |
T |
|
| Q |
347 |
tgtttagtttcaatacagccgaatcttttcgtcgaacattgttactcgatcaggtggtggatgataggttaatattgaaatccaggaagaatggtttata |
446 |
Q |
| |
|
|||||||| ||| |||||| ||| || ||||||| |||||| ||||||||||||||||| || ||||| | |||| | ||| ||||||||||| |
|
|
| T |
43219227 |
tgtttagtcctgatatagccgactctattattcgaacaaggttacttgatcaggtggtggatgacagattaatctggaaagctgagaaaaatggtttata |
43219128 |
T |
|
| Q |
447 |
ttttgttaaaagtacttacatattgtgtgtggaagaattggtatatgtttctcgcattcgacgatcgggatattggtatgatatttagagactgaaagtg |
546 |
Q |
| |
|
|| || || | | |||||| |||||||||||||||||||||| ||||||||| | ||||| || | |||| ||||| || ||||| |||||||||||| |
|
|
| T |
43219127 |
ttccgtcaagattgcttacagattgtgtgtggaagaattggtagatgtttctcaccttcgaagaccaggattttggtctgttatttggagactgaaagtt |
43219028 |
T |
|
| Q |
547 |
cctccaaaagtaaagaatttgat |
569 |
Q |
| |
|
|| || ||||||||||||||||| |
|
|
| T |
43219027 |
ccgcctaaagtaaagaatttgat |
43219005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 436 - 569
Target Start/End: Original strand, 26130880 - 26131013
Alignment:
| Q |
436 |
aatggtttatattttgttaaaagtacttacatattgtgtgtggaagaattggtatatgtttctcgcattcgacgatcgggatattggtatgatatttaga |
535 |
Q |
| |
|
||||||||||||| || || ||| |||| | ||||||||||||||||||| || ||||||||| | ||||| | | |||| ||| | || ||||| || |
|
|
| T |
26130880 |
aatggtttatattccgtcaagagtgcttatagattgtgtgtggaagaattgatagatgtttctcaccttcgaaggccaggattttgatctgttatttgga |
26130979 |
T |
|
| Q |
536 |
gactgaaagtgcctccaaaagtaaagaatttgat |
569 |
Q |
| |
|
|| ||||||| || | |||||||||||||||||| |
|
|
| T |
26130980 |
gattgaaagttccgcaaaaagtaaagaatttgat |
26131013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 47 - 285
Target Start/End: Original strand, 4608770 - 4609010
Alignment:
| Q |
47 |
ttgtctctcgtatttacaatgcgcggtactttccttcccgtagttacttgacgttgaatctaggtcacaaacctagctatgtaatgagaagtattttgaa |
146 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||| | ||| ||||||||| ||| |||||||||| ||||| |||||| |||||||||||| || |
|
|
| T |
4608770 |
ttgtctctcgtatttacaaggctcggtattttcctttctgtaactacttgacgaaaaatttaggtcacaatcctagttatgtatcgagaagtattttaaa |
4608869 |
T |
|
| Q |
147 |
ggttt--gcttcatggtgcacaacagggcacattggtgtatcagtacggatcactctatatctatacttgatgaaccatggttagtgaatgaggatcaca |
244 |
Q |
| |
|
|| | ||||||| |||||| | || |||||| |||||| ||| | ||||||||||||||||||| |||| ||||||| |||||| ||| | || |
|
|
| T |
4608870 |
ggcgtacgcttcatagtgcaccatgggtcacatttgtgtattggtatgagtcactctatatctatacttcatgagtcatggtttttgaatggggaccgca |
4608969 |
T |
|
| Q |
245 |
tagatggaaatattgtgggggtaaactttgtgagggatttt |
285 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
4608970 |
tagatggaaatagtgtggggaaaaactttgtgagggatttt |
4609010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 329 - 566
Target Start/End: Original strand, 33474 - 33711
Alignment:
| Q |
329 |
aggaagtgattcaacaagtgtttagtttcaatacagccgaatcttttcgtcgaacattgttactcgatcaggtggtggatgataggttaatattgaaatc |
428 |
Q |
| |
|
||||||| ||||||||||| | ||||| ||| |||||||||| ||| || ||||| |||||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
33474 |
aggaagtaattcaacaagtttatagttctgatatagccgaatctattcttcaaacatcgttacttgatcaggtggtggatgataggttaatatggaaagc |
33573 |
T |
|
| Q |
429 |
caggaagaatggtttatattttgttaaaagtacttacatattgtgtgtggaagaattggtatatgtttctcgcattcgacgatcgggatattggtatgat |
528 |
Q |
| |
|
||||||||||||||||| | || ||| |||| | ||||| | ||||||||||||| |||||||| | |||| | ||||||||||| || | |
|
|
| T |
33574 |
tgagaagaatggtttatattccttcaagagtgcttaaagattgtctatggaagaattggtggctgtttctcaccttcggaggcggggatattggtctggt |
33673 |
T |
|
| Q |
529 |
atttagagactgaaagtgcctccaaaagtaaagaattt |
566 |
Q |
| |
|
|||| || ||||||||||| || ||| |||||||||| |
|
|
| T |
33674 |
atttggacactgaaagtgctgccgaaaataaagaattt |
33711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 33173 - 33306
Alignment:
| Q |
16 |
aaggtttgaaatttcaga--taacttgattatgttgtctctcgtatttacaatgcgcggtactttccttcccgtagttacttgacgttgaatctaggtca |
113 |
Q |
| |
|
|||||| ||||||||||| |||| ||||| | ||||||||||||||||||| || ||||| |||||||| | |||||||||||| ||| ||||||| |
|
|
| T |
33173 |
aaggttggaaatttcagacataacctgattctcttgtctctcgtatttacaaggctcggtattttccttctcttagttacttgacaacaaatttaggtca |
33272 |
T |
|
| Q |
114 |
caaacctagctatgtaatgagaagtattttgaag |
147 |
Q |
| |
|
| | ||||| |||||| || ||||||||||||| |
|
|
| T |
33273 |
cgatcctagttatgtatggataagtattttgaag |
33306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 313 - 499
Target Start/End: Complemental strand, 17535 - 17349
Alignment:
| Q |
313 |
tcgaatggctggaatgaggaagtgattcaacaagtgtttagtttcaatacagccgaatcttttcgtcgaacattgttactcgatcaggtggtggatgata |
412 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| ||||||| ||| | |||||||| ||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
17535 |
tcgaaaggctggaactaggaagtaattcaacaaggttttagttctgatataaccgaatctattcttcgaacatcgttacttgatcaggtggtggatgata |
17436 |
T |
|
| Q |
413 |
ggttaatattgaaatccaggaagaatggtttatattttgttaaaagtacttacatattgtgtgtggaagaattggtatatgtttctc |
499 |
Q |
| |
|
||||||||| |||| | ||| ||||||||||||| | || ||| |||| | ||||| | ||||||||||||| ||||||||| |
|
|
| T |
17435 |
ggttaatatggaaagctgagaataatggtttatattccttcaagagtgcttaaagattgtctatggaagaattggtggatgtttctc |
17349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 17801 - 17687
Alignment:
| Q |
33 |
ataacttgattatgttgtctctcgtatttacaatgcgcggtactttccttcccgtagttacttgacgttgaatctaggtcacaaacctagctatgtaatg |
132 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||| || |||| |||||||| |||||||||||||| ||| |||||||| | ||||| |||||| | |
|
|
| T |
17801 |
ataacctgattctcttgtctctcgtatttacaaggcttggtattttccttctcgtagttacttgacaacaaatttaggtcacgatcctagttatgtatgg |
17702 |
T |
|
| Q |
133 |
agaagtattttgaag |
147 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
17701 |
ataagtattttgaag |
17687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 468 - 569
Target Start/End: Original strand, 20247274 - 20247375
Alignment:
| Q |
468 |
attgtgtgtggaagaattggtatatgtttctcgcattcgacgatcgggatattggtatgatatttagagactgaaagtgcctccaaaagtaaagaatttg |
567 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| | ||||| || | |||| ||||| || ||||| |||||||||||| || || ||||||||||||||| |
|
|
| T |
20247274 |
attgtgtgtggaagaattagtagatgtttctcaccttcgaagaccaggattttggtctgttatttggagactgaaagttccacctaaagtaaagaatttg |
20247373 |
T |
|
| Q |
568 |
at |
569 |
Q |
| |
|
|| |
|
|
| T |
20247374 |
at |
20247375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University